Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01560 and RS_RS01565 are separated by 229 nucleotides RS_RS01565 and RS_RS01570 are separated by 44 nucleotides
RS_RS01560: RS_RS01560 - teicoplanin resistance protein VanZ, at 347,988 to 349,214
_RS01560
RS_RS01565: RS_RS01565 - hypothetical protein, at 349,444 to 349,674
_RS01565
RS_RS01570: RS_RS01570 - phospholipase C, phosphocholine-specific, at 349,719 to 351,821
_RS01570
Position (kb) 349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 349.152 kb on + strand at 349.228 kb on - strand at 349.337 kb on + strand at 349.338 kb on - strand at 349.338 kb on - strand at 349.416 kb on - strand at 349.662 kb on + strand at 349.662 kb on + strand at 349.663 kb on - strand at 349.663 kb on - strand at 349.663 kb on - strand at 349.833 kb on + strand at 349.908 kb on + strand at 349.908 kb on + strand at 350.161 kb on - strand, within RS_RS01570 at 350.190 kb on + strand, within RS_RS01570 at 350.226 kb on + strand, within RS_RS01570 at 350.227 kb on - strand, within RS_RS01570 at 350.268 kb on + strand, within RS_RS01570 at 350.268 kb on + strand, within RS_RS01570 at 350.268 kb on + strand, within RS_RS01570 at 350.269 kb on - strand, within RS_RS01570 at 350.269 kb on - strand, within RS_RS01570 at 350.269 kb on - strand, within RS_RS01570 at 350.269 kb on - strand, within RS_RS01570 at 350.269 kb on - strand, within RS_RS01570 at 350.341 kb on - strand, within RS_RS01570 at 350.397 kb on + strand, within RS_RS01570 at 350.397 kb on + strand, within RS_RS01570 at 350.397 kb on + strand, within RS_RS01570 at 350.397 kb on + strand, within RS_RS01570 at 350.398 kb on - strand, within RS_RS01570 at 350.458 kb on - strand, within RS_RS01570 at 350.470 kb on - strand, within RS_RS01570 at 350.490 kb on + strand, within RS_RS01570 at 350.503 kb on - strand, within RS_RS01570 at 350.577 kb on + strand, within RS_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 349,152 + +1.1 349,228 - +0.4 349,337 + -0.7 349,338 - -0.0 349,338 - -2.1 349,416 - +1.0 349,662 + -0.2 349,662 + +1.8 349,663 - +0.1 349,663 - -1.0 349,663 - -2.3 349,833 + -3.4 349,908 + -2.5 349,908 + +1.3 350,161 - RS_RS01570 0.21 +0.9 350,190 + RS_RS01570 0.22 +0.7 350,226 + RS_RS01570 0.24 +1.2 350,227 - RS_RS01570 0.24 -0.5 350,268 + RS_RS01570 0.26 -1.1 350,268 + RS_RS01570 0.26 -0.8 350,268 + RS_RS01570 0.26 +0.0 350,269 - RS_RS01570 0.26 -0.8 350,269 - RS_RS01570 0.26 -0.2 350,269 - RS_RS01570 0.26 +0.1 350,269 - RS_RS01570 0.26 -0.9 350,269 - RS_RS01570 0.26 +1.5 350,341 - RS_RS01570 0.30 -2.3 350,397 + RS_RS01570 0.32 +1.2 350,397 + RS_RS01570 0.32 +0.5 350,397 + RS_RS01570 0.32 -3.5 350,397 + RS_RS01570 0.32 +1.1 350,398 - RS_RS01570 0.32 +0.3 350,458 - RS_RS01570 0.35 +0.5 350,470 - RS_RS01570 0.36 -0.8 350,490 + RS_RS01570 0.37 -0.6 350,503 - RS_RS01570 0.37 -0.5 350,577 + RS_RS01570 0.41 +1.5
Or see this region's nucleotide sequence