Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00110

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00105 and RS_RS00110 are separated by 300 nucleotidesRS_RS00110 and RS_RS00115 are separated by 49 nucleotidesRS_RS00115 and RS_RS00120 are separated by 85 nucleotides RS_RS00105: RS_RS00105 - sensor histidine kinase, at 24,619 to 26,082 _RS00105 RS_RS00110: RS_RS00110 - carbon starvation protein A, at 26,383 to 28,443 _RS00110 RS_RS00115: RS_RS00115 - DUF466 domain-containing protein, at 28,493 to 28,687 _RS00115 RS_RS00120: RS_RS00120 - sel1 repeat family protein, at 28,773 to 29,531 _RS00120 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 25.548 kb on - strand, within RS_RS00105at 25.595 kb on + strand, within RS_RS00105at 25.595 kb on + strand, within RS_RS00105at 25.595 kb on + strand, within RS_RS00105at 25.595 kb on + strand, within RS_RS00105at 25.596 kb on - strand, within RS_RS00105at 25.596 kb on - strand, within RS_RS00105at 25.596 kb on - strand, within RS_RS00105at 25.644 kb on - strand, within RS_RS00105at 25.787 kb on + strand, within RS_RS00105at 25.788 kb on - strand, within RS_RS00105at 25.788 kb on - strand, within RS_RS00105at 25.800 kb on - strand, within RS_RS00105at 25.800 kb on - strand, within RS_RS00105at 25.800 kb on - strand, within RS_RS00105at 26.135 kb on + strandat 26.135 kb on + strandat 26.135 kb on + strandat 26.135 kb on + strandat 26.136 kb on - strandat 26.136 kb on - strandat 26.160 kb on + strandat 26.161 kb on - strandat 26.164 kb on - strandat 26.166 kb on + strandat 26.183 kb on + strandat 26.183 kb on + strandat 26.184 kb on - strandat 26.184 kb on - strandat 26.184 kb on - strandat 26.184 kb on - strandat 26.220 kb on + strandat 26.220 kb on + strandat 26.221 kb on - strandat 26.221 kb on - strandat 26.221 kb on - strandat 26.224 kb on - strandat 26.246 kb on + strandat 26.247 kb on - strandat 26.247 kb on - strandat 26.507 kb on + strandat 26.508 kb on - strandat 26.508 kb on - strandat 26.508 kb on - strandat 26.516 kb on - strandat 26.516 kb on - strandat 26.516 kb on - strandat 26.533 kb on + strandat 26.534 kb on - strandat 26.534 kb on - strandat 26.534 kb on - strandat 26.534 kb on - strandat 26.534 kb on - strandat 26.536 kb on + strandat 26.537 kb on - strandat 26.537 kb on - strandat 26.537 kb on - strandat 26.537 kb on - strandat 26.546 kb on - strandat 26.620 kb on + strand, within RS_RS00110at 26.621 kb on - strand, within RS_RS00110at 26.621 kb on - strand, within RS_RS00110at 26.638 kb on + strand, within RS_RS00110at 26.638 kb on + strand, within RS_RS00110at 26.638 kb on + strand, within RS_RS00110at 26.638 kb on + strand, within RS_RS00110at 26.638 kb on + strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.639 kb on - strand, within RS_RS00110at 26.719 kb on + strand, within RS_RS00110at 26.719 kb on + strand, within RS_RS00110at 26.720 kb on - strand, within RS_RS00110at 27.007 kb on + strand, within RS_RS00110at 27.007 kb on + strand, within RS_RS00110at 27.007 kb on + strand, within RS_RS00110at 27.007 kb on + strand, within RS_RS00110at 27.007 kb on + strand, within RS_RS00110at 27.007 kb on + strand, within RS_RS00110at 27.008 kb on - strand, within RS_RS00110at 27.008 kb on - strand, within RS_RS00110at 27.133 kb on + strand, within RS_RS00110at 27.133 kb on + strand, within RS_RS00110at 27.134 kb on - strand, within RS_RS00110at 27.134 kb on - strand, within RS_RS00110at 27.134 kb on - strand, within RS_RS00110at 27.223 kb on + strand, within RS_RS00110at 27.223 kb on + strand, within RS_RS00110at 27.223 kb on + strand, within RS_RS00110at 27.550 kb on + strand, within RS_RS00110at 27.551 kb on - strand, within RS_RS00110at 27.958 kb on + strand, within RS_RS00110at 27.959 kb on - strand, within RS_RS00110at 27.959 kb on - strand, within RS_RS00110at 27.959 kb on - strand, within RS_RS00110at 27.968 kb on - strand, within RS_RS00110at 28.002 kb on + strand, within RS_RS00110at 28.003 kb on - strand, within RS_RS00110at 28.100 kb on - strand, within RS_RS00110at 28.355 kb on - strandat 28.418 kb on - strandat 28.418 kb on - strandat 28.565 kb on + strand, within RS_RS00115at 28.565 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.622 kb on + strand, within RS_RS00115at 28.622 kb on + strand, within RS_RS00115at 28.623 kb on - strand, within RS_RS00115at 28.658 kb on + strand, within RS_RS00115at 28.658 kb on + strand, within RS_RS00115at 28.659 kb on - strand, within RS_RS00115at 28.659 kb on - strand, within RS_RS00115at 28.659 kb on - strand, within RS_RS00115at 28.704 kb on + strandat 28.774 kb on + strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.823 kb on - strandat 28.951 kb on + strand, within RS_RS00120at 28.951 kb on + strand, within RS_RS00120at 28.952 kb on - strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.967 kb on - strand, within RS_RS00120at 28.967 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.114 kb on - strand, within RS_RS00120at 29.114 kb on - strand, within RS_RS00120at 29.176 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.285 kb on - strand, within RS_RS00120at 29.285 kb on - strand, within RS_RS00120

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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25,548 - RS_RS00105 0.63 +1.5
25,595 + RS_RS00105 0.67 +1.5
25,595 + RS_RS00105 0.67 +1.6
25,595 + RS_RS00105 0.67 -0.2
25,595 + RS_RS00105 0.67 -1.3
25,596 - RS_RS00105 0.67 -2.2
25,596 - RS_RS00105 0.67 +0.4
25,596 - RS_RS00105 0.67 -0.9
25,644 - RS_RS00105 0.70 +0.2
25,787 + RS_RS00105 0.80 -1.0
25,788 - RS_RS00105 0.80 -7.7
25,788 - RS_RS00105 0.80 -1.1
25,800 - RS_RS00105 0.81 +0.6
25,800 - RS_RS00105 0.81 +0.8
25,800 - RS_RS00105 0.81 -1.8
26,135 + -2.2
26,135 + -0.9
26,135 + +0.4
26,135 + +0.7
26,136 - +0.8
26,136 - +0.2
26,160 + -0.0
26,161 - -1.7
26,164 - +1.6
26,166 + +0.2
26,183 + -0.1
26,183 + +0.0
26,184 - -2.1
26,184 - -0.2
26,184 - -3.3
26,184 - -2.9
26,220 + -1.7
26,220 + +0.0
26,221 - -0.3
26,221 - +1.0
26,221 - -1.7
26,224 - -0.8
26,246 + -1.5
26,247 - +0.3
26,247 - +0.3
26,507 + -1.8
26,508 - -0.6
26,508 - +0.2
26,508 - -0.3
26,516 - +1.0
26,516 - -0.0
26,516 - -1.4
26,533 + +0.3
26,534 - -0.6
26,534 - -0.6
26,534 - -0.1
26,534 - -1.4
26,534 - -2.4
26,536 + -2.5
26,537 - -0.5
26,537 - +0.4
26,537 - -0.1
26,537 - +0.6
26,546 - -1.9
26,620 + RS_RS00110 0.11 -0.8
26,621 - RS_RS00110 0.12 +0.4
26,621 - RS_RS00110 0.12 +0.0
26,638 + RS_RS00110 0.12 -0.3
26,638 + RS_RS00110 0.12 +0.7
26,638 + RS_RS00110 0.12 +0.3
26,638 + RS_RS00110 0.12 +1.7
26,638 + RS_RS00110 0.12 +0.5
26,639 - RS_RS00110 0.12 +0.3
26,639 - RS_RS00110 0.12 +0.4
26,639 - RS_RS00110 0.12 +0.6
26,639 - RS_RS00110 0.12 -0.1
26,639 - RS_RS00110 0.12 -1.9
26,639 - RS_RS00110 0.12 -3.5
26,639 - RS_RS00110 0.12 +0.5
26,639 - RS_RS00110 0.12 +1.4
26,639 - RS_RS00110 0.12 -1.1
26,639 - RS_RS00110 0.12 +0.1
26,639 - RS_RS00110 0.12 -3.1
26,639 - RS_RS00110 0.12 -0.6
26,639 - RS_RS00110 0.12 +0.9
26,639 - RS_RS00110 0.12 -0.6
26,639 - RS_RS00110 0.12 +0.6
26,719 + RS_RS00110 0.16 -0.6
26,719 + RS_RS00110 0.16 +0.5
26,720 - RS_RS00110 0.16 +0.1
27,007 + RS_RS00110 0.30 +0.0
27,007 + RS_RS00110 0.30 -3.0
27,007 + RS_RS00110 0.30 -1.2
27,007 + RS_RS00110 0.30 +1.4
27,007 + RS_RS00110 0.30 -2.1
27,007 + RS_RS00110 0.30 -0.7
27,008 - RS_RS00110 0.30 +0.1
27,008 - RS_RS00110 0.30 -0.1
27,133 + RS_RS00110 0.36 -1.8
27,133 + RS_RS00110 0.36 -1.5
27,134 - RS_RS00110 0.36 +0.1
27,134 - RS_RS00110 0.36 -0.8
27,134 - RS_RS00110 0.36 -0.1
27,223 + RS_RS00110 0.41 +1.2
27,223 + RS_RS00110 0.41 +0.7
27,223 + RS_RS00110 0.41 -1.2
27,550 + RS_RS00110 0.57 +0.4
27,551 - RS_RS00110 0.57 +0.2
27,958 + RS_RS00110 0.76 -0.8
27,959 - RS_RS00110 0.76 -2.0
27,959 - RS_RS00110 0.76 +0.4
27,959 - RS_RS00110 0.76 -0.2
27,968 - RS_RS00110 0.77 -1.4
28,002 + RS_RS00110 0.79 +0.3
28,003 - RS_RS00110 0.79 -1.5
28,100 - RS_RS00110 0.83 +1.6
28,355 - -0.9
28,418 - -4.4
28,418 - +0.7
28,565 + RS_RS00115 0.37 +0.5
28,565 + RS_RS00115 0.37 -0.2
28,574 + RS_RS00115 0.42 +0.1
28,574 + RS_RS00115 0.42 +0.8
28,574 + RS_RS00115 0.42 -1.4
28,574 + RS_RS00115 0.42 -2.1
28,574 + RS_RS00115 0.42 -0.6
28,574 + RS_RS00115 0.42 -0.9
28,574 + RS_RS00115 0.42 -1.1
28,574 + RS_RS00115 0.42 -0.2
28,574 + RS_RS00115 0.42 -1.9
28,574 + RS_RS00115 0.42 -0.6
28,575 - RS_RS00115 0.42 -0.2
28,575 - RS_RS00115 0.42 -1.5
28,575 - RS_RS00115 0.42 -0.6
28,575 - RS_RS00115 0.42 +0.8
28,575 - RS_RS00115 0.42 -1.1
28,575 - RS_RS00115 0.42 +1.8
28,575 - RS_RS00115 0.42 +0.1
28,575 - RS_RS00115 0.42 -1.3
28,575 - RS_RS00115 0.42 -1.7
28,622 + RS_RS00115 0.66 -5.3
28,622 + RS_RS00115 0.66 +1.1
28,623 - RS_RS00115 0.67 +0.1
28,658 + RS_RS00115 0.85 -1.2
28,658 + RS_RS00115 0.85 -3.0
28,659 - RS_RS00115 0.85 -0.4
28,659 - RS_RS00115 0.85 +2.2
28,659 - RS_RS00115 0.85 -2.2
28,704 + +0.0
28,774 + +0.9
28,775 - +1.9
28,775 - -1.7
28,775 - -1.1
28,775 - -1.1
28,775 - -2.5
28,823 - +0.9
28,951 + RS_RS00120 0.23 +0.7
28,951 + RS_RS00120 0.23 -3.3
28,952 - RS_RS00120 0.24 -0.3
28,966 + RS_RS00120 0.25 -0.9
28,966 + RS_RS00120 0.25 -0.7
28,966 + RS_RS00120 0.25 +0.1
28,966 + RS_RS00120 0.25 -0.4
28,966 + RS_RS00120 0.25 -2.2
28,967 - RS_RS00120 0.26 -0.7
28,967 - RS_RS00120 0.26 -0.7
29,057 - RS_RS00120 0.37 -0.3
29,057 - RS_RS00120 0.37 -2.8
29,057 - RS_RS00120 0.37 +1.0
29,057 - RS_RS00120 0.37 +0.5
29,114 - RS_RS00120 0.45 +0.7
29,114 - RS_RS00120 0.45 -0.7
29,176 + RS_RS00120 0.53 +0.6
29,284 + RS_RS00120 0.67 +0.7
29,284 + RS_RS00120 0.67 -0.9
29,284 + RS_RS00120 0.67 -1.5
29,284 + RS_RS00120 0.67 -0.0
29,285 - RS_RS00120 0.67 +0.4
29,285 - RS_RS00120 0.67 -0.6

Or see this region's nucleotide sequence