Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_684

Experiment: chromate 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_683 and Pf6N2E2_684 are separated by 137 nucleotidesPf6N2E2_684 and Pf6N2E2_685 are separated by 200 nucleotides Pf6N2E2_683 - Probable MFS transporter, at 787,752 to 788,918 _683 Pf6N2E2_684 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 789,056 to 790,447 _684 Pf6N2E2_685 - Ferrichrome-iron receptor, at 790,648 to 792,777 _685 Position (kb) 789 790 791Strain fitness (log2 ratio) -2 -1 0 1 2at 788.092 kb on + strand, within Pf6N2E2_683at 788.190 kb on - strand, within Pf6N2E2_683at 788.564 kb on + strand, within Pf6N2E2_683at 788.564 kb on + strand, within Pf6N2E2_683at 788.565 kb on - strand, within Pf6N2E2_683at 788.566 kb on + strand, within Pf6N2E2_683at 788.566 kb on + strand, within Pf6N2E2_683at 788.567 kb on - strand, within Pf6N2E2_683at 788.567 kb on - strand, within Pf6N2E2_683at 788.567 kb on - strand, within Pf6N2E2_683at 788.567 kb on - strand, within Pf6N2E2_683at 788.770 kb on + strand, within Pf6N2E2_683at 788.770 kb on + strand, within Pf6N2E2_683at 788.771 kb on - strand, within Pf6N2E2_683at 788.771 kb on - strand, within Pf6N2E2_683at 788.824 kb on + strandat 788.833 kb on + strandat 788.834 kb on - strandat 788.930 kb on - strandat 788.957 kb on + strandat 788.957 kb on + strandat 789.009 kb on + strandat 789.009 kb on + strandat 789.009 kb on + strandat 789.010 kb on - strandat 789.224 kb on + strand, within Pf6N2E2_684at 789.225 kb on - strand, within Pf6N2E2_684at 789.473 kb on + strand, within Pf6N2E2_684at 789.473 kb on + strand, within Pf6N2E2_684at 789.473 kb on + strand, within Pf6N2E2_684at 789.473 kb on + strand, within Pf6N2E2_684at 789.473 kb on + strand, within Pf6N2E2_684at 789.474 kb on - strand, within Pf6N2E2_684at 789.474 kb on - strand, within Pf6N2E2_684at 789.474 kb on - strand, within Pf6N2E2_684at 789.474 kb on - strand, within Pf6N2E2_684at 789.654 kb on - strand, within Pf6N2E2_684at 789.656 kb on + strand, within Pf6N2E2_684at 789.657 kb on - strand, within Pf6N2E2_684at 789.657 kb on - strand, within Pf6N2E2_684at 789.657 kb on - strandat 789.763 kb on + strand, within Pf6N2E2_684at 789.764 kb on - strand, within Pf6N2E2_684at 789.764 kb on - strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.794 kb on + strand, within Pf6N2E2_684at 789.795 kb on - strand, within Pf6N2E2_684at 789.795 kb on - strand, within Pf6N2E2_684at 789.837 kb on - strand, within Pf6N2E2_684at 789.893 kb on + strand, within Pf6N2E2_684at 789.959 kb on + strand, within Pf6N2E2_684at 789.959 kb on + strand, within Pf6N2E2_684at 789.959 kb on + strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 789.960 kb on - strand, within Pf6N2E2_684at 790.007 kb on + strand, within Pf6N2E2_684at 790.007 kb on + strand, within Pf6N2E2_684at 790.008 kb on - strand, within Pf6N2E2_684at 790.125 kb on - strand, within Pf6N2E2_684at 790.177 kb on + strand, within Pf6N2E2_684at 790.177 kb on + strand, within Pf6N2E2_684at 790.177 kb on + strand, within Pf6N2E2_684at 790.178 kb on - strand, within Pf6N2E2_684at 790.376 kb on + strandat 790.376 kb on + strandat 790.377 kb on - strandat 790.446 kb on - strandat 790.634 kb on - strandat 790.634 kb on - strandat 790.687 kb on + strandat 790.688 kb on - strandat 790.688 kb on - strandat 790.777 kb on + strandat 790.778 kb on - strandat 790.940 kb on - strand, within Pf6N2E2_685at 790.989 kb on + strand, within Pf6N2E2_685at 790.990 kb on - strand, within Pf6N2E2_685at 790.990 kb on - strand, within Pf6N2E2_685at 790.990 kb on - strand, within Pf6N2E2_685at 791.026 kb on + strand, within Pf6N2E2_685

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
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788,092 + Pf6N2E2_683 0.29 +0.8
788,190 - Pf6N2E2_683 0.38 -0.9
788,564 + Pf6N2E2_683 0.70 -0.9
788,564 + Pf6N2E2_683 0.70 -0.3
788,565 - Pf6N2E2_683 0.70 -0.3
788,566 + Pf6N2E2_683 0.70 -0.4
788,566 + Pf6N2E2_683 0.70 +0.4
788,567 - Pf6N2E2_683 0.70 +0.6
788,567 - Pf6N2E2_683 0.70 -1.1
788,567 - Pf6N2E2_683 0.70 -1.4
788,567 - Pf6N2E2_683 0.70 +0.6
788,770 + Pf6N2E2_683 0.87 -0.5
788,770 + Pf6N2E2_683 0.87 +0.6
788,771 - Pf6N2E2_683 0.87 +0.6
788,771 - Pf6N2E2_683 0.87 -2.4
788,824 + +0.7
788,833 + +1.8
788,834 - +0.5
788,930 - -0.2
788,957 + +0.2
788,957 + -0.9
789,009 + +0.3
789,009 + +0.6
789,009 + +0.3
789,010 - -0.4
789,224 + Pf6N2E2_684 0.12 -0.1
789,225 - Pf6N2E2_684 0.12 -0.9
789,473 + Pf6N2E2_684 0.30 +0.6
789,473 + Pf6N2E2_684 0.30 -0.7
789,473 + Pf6N2E2_684 0.30 +0.3
789,473 + Pf6N2E2_684 0.30 -0.4
789,473 + Pf6N2E2_684 0.30 +0.4
789,474 - Pf6N2E2_684 0.30 -1.3
789,474 - Pf6N2E2_684 0.30 +1.1
789,474 - Pf6N2E2_684 0.30 +0.3
789,474 - Pf6N2E2_684 0.30 -1.0
789,654 - Pf6N2E2_684 0.43 +0.1
789,656 + Pf6N2E2_684 0.43 -1.1
789,657 - Pf6N2E2_684 0.43 -1.2
789,657 - Pf6N2E2_684 0.43 -0.7
789,657 - +1.5
789,763 + Pf6N2E2_684 0.51 +0.1
789,764 - Pf6N2E2_684 0.51 -0.1
789,764 - Pf6N2E2_684 0.51 +0.5
789,794 + Pf6N2E2_684 0.53 +0.1
789,794 + Pf6N2E2_684 0.53 -0.0
789,794 + Pf6N2E2_684 0.53 +0.7
789,794 + Pf6N2E2_684 0.53 -1.5
789,795 - Pf6N2E2_684 0.53 +0.1
789,795 - Pf6N2E2_684 0.53 +0.1
789,837 - Pf6N2E2_684 0.56 +0.6
789,893 + Pf6N2E2_684 0.60 +0.0
789,959 + Pf6N2E2_684 0.65 +0.9
789,959 + Pf6N2E2_684 0.65 +2.0
789,959 + Pf6N2E2_684 0.65 +0.4
789,960 - Pf6N2E2_684 0.65 -0.9
789,960 - Pf6N2E2_684 0.65 -0.8
789,960 - Pf6N2E2_684 0.65 -0.5
789,960 - Pf6N2E2_684 0.65 -0.8
789,960 - Pf6N2E2_684 0.65 +0.2
789,960 - Pf6N2E2_684 0.65 -0.5
790,007 + Pf6N2E2_684 0.68 -0.9
790,007 + Pf6N2E2_684 0.68 -0.9
790,008 - Pf6N2E2_684 0.68 +1.4
790,125 - Pf6N2E2_684 0.77 -0.4
790,177 + Pf6N2E2_684 0.81 +1.6
790,177 + Pf6N2E2_684 0.81 -0.3
790,177 + Pf6N2E2_684 0.81 -0.3
790,178 - Pf6N2E2_684 0.81 +0.7
790,376 + +0.6
790,376 + +0.3
790,377 - -0.5
790,446 - -0.0
790,634 - +0.5
790,634 - +0.0
790,687 + -0.3
790,688 - -0.4
790,688 - -0.6
790,777 + +0.1
790,778 - +1.5
790,940 - Pf6N2E2_685 0.14 -0.3
790,989 + Pf6N2E2_685 0.16 +0.7
790,990 - Pf6N2E2_685 0.16 +0.2
790,990 - Pf6N2E2_685 0.16 -1.3
790,990 - Pf6N2E2_685 0.16 +0.8
791,026 + Pf6N2E2_685 0.18 +0.5

Or see this region's nucleotide sequence