Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5239

Experiment: chromate 0.0000015625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5237 and Pf6N2E2_5238 are separated by 3 nucleotidesPf6N2E2_5238 and Pf6N2E2_5239 are separated by 126 nucleotidesPf6N2E2_5239 and Pf6N2E2_5240 are separated by 266 nucleotidesPf6N2E2_5240 and Pf6N2E2_5241 are separated by 61 nucleotides Pf6N2E2_5237 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 6,034,169 to 6,034,726 _5237 Pf6N2E2_5238 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 6,034,730 to 6,035,203 _5238 Pf6N2E2_5239 - Putative sulfate permease, at 6,035,330 to 6,037,072 _5239 Pf6N2E2_5240 - FIG00953775: hypothetical protein, at 6,037,339 to 6,037,824 _5240 Pf6N2E2_5241 - Aminopeptidase N, at 6,037,886 to 6,038,173 _5241 Position (kb) 6035 6036 6037 6038Strain fitness (log2 ratio) -2 -1 0 1 2at 6034.383 kb on - strand, within Pf6N2E2_5237at 6034.650 kb on - strand, within Pf6N2E2_5237at 6034.650 kb on - strand, within Pf6N2E2_5237at 6034.673 kb on + strandat 6034.673 kb on + strandat 6034.673 kb on + strandat 6034.673 kb on + strandat 6034.674 kb on - strandat 6034.674 kb on - strandat 6034.674 kb on - strandat 6034.724 kb on + strandat 6034.724 kb on + strandat 6034.724 kb on + strandat 6034.724 kb on + strandat 6034.725 kb on - strandat 6034.725 kb on - strandat 6034.816 kb on + strand, within Pf6N2E2_5238at 6034.816 kb on + strand, within Pf6N2E2_5238at 6034.817 kb on - strand, within Pf6N2E2_5238at 6034.817 kb on - strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6035.042 kb on + strand, within Pf6N2E2_5238at 6035.267 kb on + strandat 6035.412 kb on + strandat 6035.412 kb on + strandat 6035.412 kb on + strandat 6035.413 kb on - strandat 6035.413 kb on - strandat 6035.413 kb on - strandat 6035.413 kb on - strandat 6035.413 kb on - strandat 6035.413 kb on - strandat 6035.855 kb on + strand, within Pf6N2E2_5239at 6035.856 kb on - strand, within Pf6N2E2_5239at 6035.856 kb on - strand, within Pf6N2E2_5239at 6035.856 kb on - strand, within Pf6N2E2_5239at 6035.856 kb on - strand, within Pf6N2E2_5239at 6035.856 kb on - strand, within Pf6N2E2_5239at 6035.856 kb on - strand, within Pf6N2E2_5239at 6035.884 kb on + strand, within Pf6N2E2_5239at 6035.884 kb on + strand, within Pf6N2E2_5239at 6035.884 kb on + strand, within Pf6N2E2_5239at 6035.884 kb on + strand, within Pf6N2E2_5239at 6035.884 kb on + strand, within Pf6N2E2_5239at 6035.884 kb on + strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.885 kb on - strand, within Pf6N2E2_5239at 6035.961 kb on + strand, within Pf6N2E2_5239at 6036.264 kb on + strand, within Pf6N2E2_5239at 6036.264 kb on + strand, within Pf6N2E2_5239at 6036.265 kb on - strand, within Pf6N2E2_5239at 6036.265 kb on - strand, within Pf6N2E2_5239at 6036.265 kb on - strand, within Pf6N2E2_5239at 6036.265 kb on - strand, within Pf6N2E2_5239at 6036.369 kb on + strand, within Pf6N2E2_5239at 6036.369 kb on + strand, within Pf6N2E2_5239at 6036.369 kb on + strand, within Pf6N2E2_5239at 6036.369 kb on + strand, within Pf6N2E2_5239at 6036.370 kb on - strand, within Pf6N2E2_5239at 6036.370 kb on - strand, within Pf6N2E2_5239at 6036.370 kb on - strand, within Pf6N2E2_5239at 6036.370 kb on - strand, within Pf6N2E2_5239at 6036.370 kb on - strand, within Pf6N2E2_5239at 6036.370 kb on - strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.585 kb on + strand, within Pf6N2E2_5239at 6036.586 kb on - strand, within Pf6N2E2_5239at 6036.586 kb on - strand, within Pf6N2E2_5239at 6036.586 kb on - strand, within Pf6N2E2_5239at 6036.586 kb on - strand, within Pf6N2E2_5239at 6036.586 kb on - strand, within Pf6N2E2_5239at 6036.696 kb on + strand, within Pf6N2E2_5239at 6036.696 kb on + strand, within Pf6N2E2_5239at 6036.696 kb on + strand, within Pf6N2E2_5239at 6036.696 kb on + strand, within Pf6N2E2_5239at 6036.696 kb on + strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.697 kb on - strand, within Pf6N2E2_5239at 6036.897 kb on + strand, within Pf6N2E2_5239at 6036.897 kb on + strand, within Pf6N2E2_5239at 6036.897 kb on + strand, within Pf6N2E2_5239at 6036.897 kb on + strand, within Pf6N2E2_5239at 6036.898 kb on - strandat 6036.898 kb on - strandat 6036.898 kb on - strandat 6036.898 kb on - strandat 6037.014 kb on + strandat 6037.076 kb on + strandat 6037.076 kb on + strandat 6037.076 kb on + strandat 6037.076 kb on + strandat 6037.076 kb on + strandat 6037.077 kb on - strandat 6037.077 kb on - strandat 6037.077 kb on - strandat 6037.077 kb on - strandat 6037.143 kb on - strandat 6037.154 kb on + strandat 6037.154 kb on + strandat 6037.154 kb on + strandat 6037.154 kb on + strandat 6037.154 kb on + strandat 6037.154 kb on + strandat 6037.155 kb on - strandat 6037.155 kb on - strandat 6037.155 kb on - strandat 6037.155 kb on - strandat 6037.158 kb on - strandat 6037.158 kb on - strandat 6037.267 kb on + strandat 6037.290 kb on - strandat 6037.307 kb on + strandat 6037.308 kb on - strandat 6037.365 kb on + strandat 6037.498 kb on + strand, within Pf6N2E2_5240at 6037.623 kb on + strand, within Pf6N2E2_5240at 6037.624 kb on - strand, within Pf6N2E2_5240at 6037.696 kb on + strand, within Pf6N2E2_5240at 6037.697 kb on - strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.750 kb on + strand, within Pf6N2E2_5240at 6037.751 kb on - strand, within Pf6N2E2_5240at 6037.751 kb on - strand, within Pf6N2E2_5240at 6037.768 kb on + strand, within Pf6N2E2_5240at 6037.769 kb on - strand, within Pf6N2E2_5240at 6037.769 kb on - strand, within Pf6N2E2_5240at 6037.783 kb on - strandat 6037.783 kb on - strandat 6037.783 kb on - strandat 6037.783 kb on - strandat 6037.783 kb on - strandat 6037.783 kb on - strandat 6037.846 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
remove
6,034,383 - Pf6N2E2_5237 0.38 +1.8
6,034,650 - Pf6N2E2_5237 0.86 +0.1
6,034,650 - Pf6N2E2_5237 0.86 -0.6
6,034,673 + -1.6
6,034,673 + +0.3
6,034,673 + -0.0
6,034,673 + +1.3
6,034,674 - +0.7
6,034,674 - -0.1
6,034,674 - +1.2
6,034,724 + +0.5
6,034,724 + +0.1
6,034,724 + +0.6
6,034,724 + +0.4
6,034,725 - +1.1
6,034,725 - +0.9
6,034,816 + Pf6N2E2_5238 0.18 +1.4
6,034,816 + Pf6N2E2_5238 0.18 +0.9
6,034,817 - Pf6N2E2_5238 0.18 -0.9
6,034,817 - Pf6N2E2_5238 0.18 +0.9
6,034,877 + Pf6N2E2_5238 0.31 +1.6
6,034,877 + Pf6N2E2_5238 0.31 +0.1
6,034,877 + Pf6N2E2_5238 0.31 +0.4
6,034,877 + Pf6N2E2_5238 0.31 +0.8
6,034,878 - Pf6N2E2_5238 0.31 -1.1
6,034,878 - Pf6N2E2_5238 0.31 -0.1
6,034,878 - Pf6N2E2_5238 0.31 +0.5
6,034,878 - Pf6N2E2_5238 0.31 -0.6
6,035,042 + Pf6N2E2_5238 0.66 +0.3
6,035,267 + +0.1
6,035,412 + +1.5
6,035,412 + +0.6
6,035,412 + +0.0
6,035,413 - -0.4
6,035,413 - -0.6
6,035,413 - +0.6
6,035,413 - +0.4
6,035,413 - -1.0
6,035,413 - -1.5
6,035,855 + Pf6N2E2_5239 0.30 +0.0
6,035,856 - Pf6N2E2_5239 0.30 +1.5
6,035,856 - Pf6N2E2_5239 0.30 +0.1
6,035,856 - Pf6N2E2_5239 0.30 -0.0
6,035,856 - Pf6N2E2_5239 0.30 -0.7
6,035,856 - Pf6N2E2_5239 0.30 +0.2
6,035,856 - Pf6N2E2_5239 0.30 +0.0
6,035,884 + Pf6N2E2_5239 0.32 +2.1
6,035,884 + Pf6N2E2_5239 0.32 +0.7
6,035,884 + Pf6N2E2_5239 0.32 +0.7
6,035,884 + Pf6N2E2_5239 0.32 -0.1
6,035,884 + Pf6N2E2_5239 0.32 +0.7
6,035,884 + Pf6N2E2_5239 0.32 +0.9
6,035,885 - Pf6N2E2_5239 0.32 -1.0
6,035,885 - Pf6N2E2_5239 0.32 -0.4
6,035,885 - Pf6N2E2_5239 0.32 +0.1
6,035,885 - Pf6N2E2_5239 0.32 +0.5
6,035,885 - Pf6N2E2_5239 0.32 +0.8
6,035,885 - Pf6N2E2_5239 0.32 -0.4
6,035,885 - Pf6N2E2_5239 0.32 -0.2
6,035,885 - Pf6N2E2_5239 0.32 +1.0
6,035,885 - Pf6N2E2_5239 0.32 +0.1
6,035,961 + Pf6N2E2_5239 0.36 +1.8
6,036,264 + Pf6N2E2_5239 0.54 -0.3
6,036,264 + Pf6N2E2_5239 0.54 +1.0
6,036,265 - Pf6N2E2_5239 0.54 +0.3
6,036,265 - Pf6N2E2_5239 0.54 +0.5
6,036,265 - Pf6N2E2_5239 0.54 -0.9
6,036,265 - Pf6N2E2_5239 0.54 -0.7
6,036,369 + Pf6N2E2_5239 0.60 +0.5
6,036,369 + Pf6N2E2_5239 0.60 +0.8
6,036,369 + Pf6N2E2_5239 0.60 +0.4
6,036,369 + Pf6N2E2_5239 0.60 +1.0
6,036,370 - Pf6N2E2_5239 0.60 -1.9
6,036,370 - Pf6N2E2_5239 0.60 +0.7
6,036,370 - Pf6N2E2_5239 0.60 +0.8
6,036,370 - Pf6N2E2_5239 0.60 +0.6
6,036,370 - Pf6N2E2_5239 0.60 -0.7
6,036,370 - Pf6N2E2_5239 0.60 -0.4
6,036,585 + Pf6N2E2_5239 0.72 +2.6
6,036,585 + Pf6N2E2_5239 0.72 +0.2
6,036,585 + Pf6N2E2_5239 0.72 +1.1
6,036,585 + Pf6N2E2_5239 0.72 -0.5
6,036,585 + Pf6N2E2_5239 0.72 +0.6
6,036,585 + Pf6N2E2_5239 0.72 +0.7
6,036,585 + Pf6N2E2_5239 0.72 +0.2
6,036,585 + Pf6N2E2_5239 0.72 +0.7
6,036,586 - Pf6N2E2_5239 0.72 -0.5
6,036,586 - Pf6N2E2_5239 0.72 +0.3
6,036,586 - Pf6N2E2_5239 0.72 +0.2
6,036,586 - Pf6N2E2_5239 0.72 +0.0
6,036,586 - Pf6N2E2_5239 0.72 +1.1
6,036,696 + Pf6N2E2_5239 0.78 -0.2
6,036,696 + Pf6N2E2_5239 0.78 +0.5
6,036,696 + Pf6N2E2_5239 0.78 -0.5
6,036,696 + Pf6N2E2_5239 0.78 +0.3
6,036,696 + Pf6N2E2_5239 0.78 +0.2
6,036,697 - Pf6N2E2_5239 0.78 -0.2
6,036,697 - Pf6N2E2_5239 0.78 -0.2
6,036,697 - Pf6N2E2_5239 0.78 -0.3
6,036,697 - Pf6N2E2_5239 0.78 +0.8
6,036,697 - Pf6N2E2_5239 0.78 +0.1
6,036,697 - Pf6N2E2_5239 0.78 -0.4
6,036,697 - Pf6N2E2_5239 0.78 -0.2
6,036,697 - Pf6N2E2_5239 0.78 +0.7
6,036,897 + Pf6N2E2_5239 0.90 +1.0
6,036,897 + Pf6N2E2_5239 0.90 +0.4
6,036,897 + Pf6N2E2_5239 0.90 +1.4
6,036,897 + Pf6N2E2_5239 0.90 +0.7
6,036,898 - -0.4
6,036,898 - +0.4
6,036,898 - +0.7
6,036,898 - +0.4
6,037,014 + +0.2
6,037,076 + +1.6
6,037,076 + +0.4
6,037,076 + +0.2
6,037,076 + +1.0
6,037,076 + +1.5
6,037,077 - -0.7
6,037,077 - -0.3
6,037,077 - -0.4
6,037,077 - -1.3
6,037,143 - +1.0
6,037,154 + +0.3
6,037,154 + +0.1
6,037,154 + +1.2
6,037,154 + +0.6
6,037,154 + +0.8
6,037,154 + +0.2
6,037,155 - +0.1
6,037,155 - +1.3
6,037,155 - +1.5
6,037,155 - +0.6
6,037,158 - +1.1
6,037,158 - +0.1
6,037,267 + +0.3
6,037,290 - +1.7
6,037,307 + +1.1
6,037,308 - +1.0
6,037,365 + +0.9
6,037,498 + Pf6N2E2_5240 0.33 +1.0
6,037,623 + Pf6N2E2_5240 0.58 -0.4
6,037,624 - Pf6N2E2_5240 0.59 +0.2
6,037,696 + Pf6N2E2_5240 0.73 +1.7
6,037,697 - Pf6N2E2_5240 0.74 +0.2
6,037,750 + Pf6N2E2_5240 0.85 +1.2
6,037,750 + Pf6N2E2_5240 0.85 +0.5
6,037,750 + Pf6N2E2_5240 0.85 +0.1
6,037,750 + Pf6N2E2_5240 0.85 +0.5
6,037,750 + Pf6N2E2_5240 0.85 +0.9
6,037,750 + Pf6N2E2_5240 0.85 +1.3
6,037,750 + Pf6N2E2_5240 0.85 -0.0
6,037,751 - Pf6N2E2_5240 0.85 +0.8
6,037,751 - Pf6N2E2_5240 0.85 +1.2
6,037,768 + Pf6N2E2_5240 0.88 -0.0
6,037,769 - Pf6N2E2_5240 0.88 +1.4
6,037,769 - Pf6N2E2_5240 0.88 +1.0
6,037,783 - +1.3
6,037,783 - +0.5
6,037,783 - +1.2
6,037,783 - +1.6
6,037,783 - +1.1
6,037,783 - +1.0
6,037,846 - +1.2

Or see this region's nucleotide sequence