Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3309

Experiment: chromate 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3308 and Pf6N2E2_3309 are separated by 169 nucleotidesPf6N2E2_3309 and Pf6N2E2_3310 are separated by 75 nucleotides Pf6N2E2_3308 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 3,820,751 to 3,822,352 _3308 Pf6N2E2_3309 - Outer membrane porin, OprD family, at 3,822,522 to 3,823,901 _3309 Pf6N2E2_3310 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 3,823,977 to 3,825,572 _3310 Position (kb) 3822 3823 3824Strain fitness (log2 ratio) -1 0 1 2at 3821.562 kb on + strand, within Pf6N2E2_3308at 3821.563 kb on - strand, within Pf6N2E2_3308at 3821.563 kb on - strand, within Pf6N2E2_3308at 3821.625 kb on - strand, within Pf6N2E2_3308at 3821.625 kb on - strand, within Pf6N2E2_3308at 3821.633 kb on + strand, within Pf6N2E2_3308at 3821.633 kb on + strand, within Pf6N2E2_3308at 3821.633 kb on + strand, within Pf6N2E2_3308at 3821.633 kb on + strand, within Pf6N2E2_3308at 3821.633 kb on + strand, within Pf6N2E2_3308at 3821.633 kb on + strand, within Pf6N2E2_3308at 3821.634 kb on - strand, within Pf6N2E2_3308at 3821.634 kb on - strand, within Pf6N2E2_3308at 3821.635 kb on + strand, within Pf6N2E2_3308at 3821.635 kb on + strand, within Pf6N2E2_3308at 3821.635 kb on + strand, within Pf6N2E2_3308at 3821.636 kb on - strand, within Pf6N2E2_3308at 3821.636 kb on - strand, within Pf6N2E2_3308at 3821.636 kb on - strand, within Pf6N2E2_3308at 3821.636 kb on - strand, within Pf6N2E2_3308at 3821.724 kb on - strand, within Pf6N2E2_3308at 3821.777 kb on + strand, within Pf6N2E2_3308at 3821.804 kb on + strand, within Pf6N2E2_3308at 3821.804 kb on + strand, within Pf6N2E2_3308at 3821.804 kb on + strand, within Pf6N2E2_3308at 3821.804 kb on + strand, within Pf6N2E2_3308at 3821.805 kb on - strand, within Pf6N2E2_3308at 3821.897 kb on + strand, within Pf6N2E2_3308at 3821.898 kb on - strand, within Pf6N2E2_3308at 3821.898 kb on - strand, within Pf6N2E2_3308at 3821.979 kb on - strand, within Pf6N2E2_3308at 3821.993 kb on + strand, within Pf6N2E2_3308at 3821.993 kb on + strand, within Pf6N2E2_3308at 3821.993 kb on + strand, within Pf6N2E2_3308at 3821.994 kb on - strand, within Pf6N2E2_3308at 3821.994 kb on - strand, within Pf6N2E2_3308at 3821.994 kb on - strand, within Pf6N2E2_3308at 3821.994 kb on - strand, within Pf6N2E2_3308at 3821.994 kb on - strand, within Pf6N2E2_3308at 3822.086 kb on + strand, within Pf6N2E2_3308at 3822.086 kb on + strand, within Pf6N2E2_3308at 3822.116 kb on + strand, within Pf6N2E2_3308at 3822.116 kb on + strand, within Pf6N2E2_3308at 3822.116 kb on + strand, within Pf6N2E2_3308at 3822.117 kb on - strand, within Pf6N2E2_3308at 3822.117 kb on - strand, within Pf6N2E2_3308at 3822.140 kb on + strand, within Pf6N2E2_3308at 3822.200 kb on + strandat 3822.460 kb on - strandat 3822.545 kb on - strandat 3822.583 kb on - strandat 3822.662 kb on - strand, within Pf6N2E2_3309at 3822.662 kb on - strand, within Pf6N2E2_3309at 3822.700 kb on - strand, within Pf6N2E2_3309at 3822.726 kb on - strand, within Pf6N2E2_3309at 3822.738 kb on + strand, within Pf6N2E2_3309at 3822.739 kb on - strand, within Pf6N2E2_3309at 3822.739 kb on - strand, within Pf6N2E2_3309at 3822.739 kb on - strand, within Pf6N2E2_3309at 3822.807 kb on + strand, within Pf6N2E2_3309at 3822.808 kb on - strand, within Pf6N2E2_3309at 3822.808 kb on - strand, within Pf6N2E2_3309at 3822.808 kb on - strand, within Pf6N2E2_3309at 3822.830 kb on + strand, within Pf6N2E2_3309at 3822.831 kb on - strand, within Pf6N2E2_3309at 3822.861 kb on + strand, within Pf6N2E2_3309at 3822.862 kb on - strand, within Pf6N2E2_3309at 3823.243 kb on - strand, within Pf6N2E2_3309at 3823.243 kb on - strand, within Pf6N2E2_3309at 3823.308 kb on + strand, within Pf6N2E2_3309at 3823.309 kb on - strand, within Pf6N2E2_3309at 3823.311 kb on + strand, within Pf6N2E2_3309at 3823.312 kb on - strand, within Pf6N2E2_3309at 3823.312 kb on - strand, within Pf6N2E2_3309at 3823.312 kb on - strand, within Pf6N2E2_3309at 3823.330 kb on + strand, within Pf6N2E2_3309at 3823.331 kb on - strand, within Pf6N2E2_3309at 3823.331 kb on - strand, within Pf6N2E2_3309at 3823.331 kb on - strand, within Pf6N2E2_3309at 3823.374 kb on + strand, within Pf6N2E2_3309at 3823.374 kb on + strand, within Pf6N2E2_3309at 3823.374 kb on + strand, within Pf6N2E2_3309at 3823.375 kb on - strand, within Pf6N2E2_3309at 3823.375 kb on - strand, within Pf6N2E2_3309at 3823.378 kb on - strand, within Pf6N2E2_3309at 3823.431 kb on + strand, within Pf6N2E2_3309at 3823.432 kb on - strand, within Pf6N2E2_3309at 3823.432 kb on - strand, within Pf6N2E2_3309at 3823.432 kb on - strand, within Pf6N2E2_3309at 3823.432 kb on - strand, within Pf6N2E2_3309at 3823.432 kb on - strand, within Pf6N2E2_3309at 3823.483 kb on - strand, within Pf6N2E2_3309at 3823.506 kb on + strand, within Pf6N2E2_3309at 3823.506 kb on + strand, within Pf6N2E2_3309at 3823.507 kb on - strand, within Pf6N2E2_3309at 3823.515 kb on + strand, within Pf6N2E2_3309at 3823.515 kb on + strand, within Pf6N2E2_3309at 3823.539 kb on + strand, within Pf6N2E2_3309at 3823.539 kb on + strand, within Pf6N2E2_3309at 3823.539 kb on + strand, within Pf6N2E2_3309at 3823.540 kb on - strand, within Pf6N2E2_3309at 3823.540 kb on - strand, within Pf6N2E2_3309at 3823.653 kb on + strand, within Pf6N2E2_3309at 3823.653 kb on + strand, within Pf6N2E2_3309at 3823.653 kb on + strand, within Pf6N2E2_3309at 3823.653 kb on + strand, within Pf6N2E2_3309at 3823.654 kb on - strand, within Pf6N2E2_3309at 3823.654 kb on - strand, within Pf6N2E2_3309at 3823.654 kb on - strand, within Pf6N2E2_3309at 3823.654 kb on - strand, within Pf6N2E2_3309at 3823.654 kb on - strand, within Pf6N2E2_3309at 3823.689 kb on + strand, within Pf6N2E2_3309at 3823.689 kb on + strand, within Pf6N2E2_3309at 3823.689 kb on + strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.690 kb on - strand, within Pf6N2E2_3309at 3823.741 kb on - strand, within Pf6N2E2_3309at 3823.764 kb on + strandat 3823.765 kb on - strandat 3823.771 kb on + strandat 3823.772 kb on - strandat 3823.812 kb on + strandat 3823.813 kb on - strandat 3823.899 kb on + strandat 3824.101 kb on - strandat 3824.101 kb on - strandat 3824.232 kb on + strand, within Pf6N2E2_3310at 3824.232 kb on + strand, within Pf6N2E2_3310at 3824.232 kb on + strand, within Pf6N2E2_3310at 3824.233 kb on - strand, within Pf6N2E2_3310at 3824.233 kb on - strand, within Pf6N2E2_3310at 3824.277 kb on + strand, within Pf6N2E2_3310at 3824.277 kb on + strand, within Pf6N2E2_3310at 3824.278 kb on - strand, within Pf6N2E2_3310at 3824.278 kb on - strand, within Pf6N2E2_3310at 3824.278 kb on - strand, within Pf6N2E2_3310at 3824.385 kb on + strand, within Pf6N2E2_3310at 3824.386 kb on - strand, within Pf6N2E2_3310at 3824.614 kb on - strand, within Pf6N2E2_3310at 3824.656 kb on - strand, within Pf6N2E2_3310at 3824.656 kb on - strand, within Pf6N2E2_3310at 3824.760 kb on + strand, within Pf6N2E2_3310at 3824.841 kb on + strand, within Pf6N2E2_3310at 3824.856 kb on - strand, within Pf6N2E2_3310at 3824.856 kb on - strand, within Pf6N2E2_3310at 3824.856 kb on - strand, within Pf6N2E2_3310at 3824.868 kb on + strand, within Pf6N2E2_3310at 3824.868 kb on + strand, within Pf6N2E2_3310at 3824.868 kb on + strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310at 3824.869 kb on - strand, within Pf6N2E2_3310

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
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3,821,562 + Pf6N2E2_3308 0.51 +0.8
3,821,563 - Pf6N2E2_3308 0.51 -0.6
3,821,563 - Pf6N2E2_3308 0.51 +1.2
3,821,625 - Pf6N2E2_3308 0.55 +0.5
3,821,625 - Pf6N2E2_3308 0.55 -0.2
3,821,633 + Pf6N2E2_3308 0.55 +0.9
3,821,633 + Pf6N2E2_3308 0.55 +0.7
3,821,633 + Pf6N2E2_3308 0.55 +0.4
3,821,633 + Pf6N2E2_3308 0.55 +0.6
3,821,633 + Pf6N2E2_3308 0.55 -0.7
3,821,633 + Pf6N2E2_3308 0.55 +0.0
3,821,634 - Pf6N2E2_3308 0.55 +0.9
3,821,634 - Pf6N2E2_3308 0.55 -0.3
3,821,635 + Pf6N2E2_3308 0.55 +0.3
3,821,635 + Pf6N2E2_3308 0.55 -1.5
3,821,635 + Pf6N2E2_3308 0.55 -0.9
3,821,636 - Pf6N2E2_3308 0.55 -0.1
3,821,636 - Pf6N2E2_3308 0.55 -1.3
3,821,636 - Pf6N2E2_3308 0.55 -0.2
3,821,636 - Pf6N2E2_3308 0.55 +0.6
3,821,724 - Pf6N2E2_3308 0.61 -0.0
3,821,777 + Pf6N2E2_3308 0.64 +0.1
3,821,804 + Pf6N2E2_3308 0.66 -0.0
3,821,804 + Pf6N2E2_3308 0.66 +1.0
3,821,804 + Pf6N2E2_3308 0.66 +0.3
3,821,804 + Pf6N2E2_3308 0.66 +0.7
3,821,805 - Pf6N2E2_3308 0.66 -0.4
3,821,897 + Pf6N2E2_3308 0.72 +0.5
3,821,898 - Pf6N2E2_3308 0.72 +1.1
3,821,898 - Pf6N2E2_3308 0.72 +0.8
3,821,979 - Pf6N2E2_3308 0.77 +0.8
3,821,993 + Pf6N2E2_3308 0.78 +0.2
3,821,993 + Pf6N2E2_3308 0.78 +0.5
3,821,993 + Pf6N2E2_3308 0.78 -0.1
3,821,994 - Pf6N2E2_3308 0.78 -0.6
3,821,994 - Pf6N2E2_3308 0.78 -0.3
3,821,994 - Pf6N2E2_3308 0.78 +0.0
3,821,994 - Pf6N2E2_3308 0.78 -0.8
3,821,994 - Pf6N2E2_3308 0.78 +0.0
3,822,086 + Pf6N2E2_3308 0.83 +1.6
3,822,086 + Pf6N2E2_3308 0.83 +0.4
3,822,116 + Pf6N2E2_3308 0.85 +0.5
3,822,116 + Pf6N2E2_3308 0.85 +0.5
3,822,116 + Pf6N2E2_3308 0.85 +1.7
3,822,117 - Pf6N2E2_3308 0.85 -1.3
3,822,117 - Pf6N2E2_3308 0.85 +1.5
3,822,140 + Pf6N2E2_3308 0.87 +0.5
3,822,200 + +0.5
3,822,460 - -1.1
3,822,545 - -0.7
3,822,583 - -0.3
3,822,662 - Pf6N2E2_3309 0.10 -0.0
3,822,662 - Pf6N2E2_3309 0.10 +0.2
3,822,700 - Pf6N2E2_3309 0.13 +0.9
3,822,726 - Pf6N2E2_3309 0.15 -0.8
3,822,738 + Pf6N2E2_3309 0.16 -0.3
3,822,739 - Pf6N2E2_3309 0.16 -0.2
3,822,739 - Pf6N2E2_3309 0.16 -0.3
3,822,739 - Pf6N2E2_3309 0.16 -0.7
3,822,807 + Pf6N2E2_3309 0.21 -1.3
3,822,808 - Pf6N2E2_3309 0.21 +0.1
3,822,808 - Pf6N2E2_3309 0.21 -0.1
3,822,808 - Pf6N2E2_3309 0.21 -0.9
3,822,830 + Pf6N2E2_3309 0.22 +0.6
3,822,831 - Pf6N2E2_3309 0.22 +0.7
3,822,861 + Pf6N2E2_3309 0.25 -0.4
3,822,862 - Pf6N2E2_3309 0.25 +0.4
3,823,243 - Pf6N2E2_3309 0.52 -0.0
3,823,243 - Pf6N2E2_3309 0.52 +0.2
3,823,308 + Pf6N2E2_3309 0.57 +0.0
3,823,309 - Pf6N2E2_3309 0.57 +0.0
3,823,311 + Pf6N2E2_3309 0.57 +1.2
3,823,312 - Pf6N2E2_3309 0.57 +0.4
3,823,312 - Pf6N2E2_3309 0.57 -0.6
3,823,312 - Pf6N2E2_3309 0.57 +1.1
3,823,330 + Pf6N2E2_3309 0.59 -0.3
3,823,331 - Pf6N2E2_3309 0.59 -0.2
3,823,331 - Pf6N2E2_3309 0.59 -0.6
3,823,331 - Pf6N2E2_3309 0.59 +0.4
3,823,374 + Pf6N2E2_3309 0.62 -0.0
3,823,374 + Pf6N2E2_3309 0.62 -0.0
3,823,374 + Pf6N2E2_3309 0.62 +1.3
3,823,375 - Pf6N2E2_3309 0.62 +0.7
3,823,375 - Pf6N2E2_3309 0.62 +1.0
3,823,378 - Pf6N2E2_3309 0.62 +0.2
3,823,431 + Pf6N2E2_3309 0.66 +0.4
3,823,432 - Pf6N2E2_3309 0.66 +0.2
3,823,432 - Pf6N2E2_3309 0.66 +1.4
3,823,432 - Pf6N2E2_3309 0.66 -1.2
3,823,432 - Pf6N2E2_3309 0.66 +0.3
3,823,432 - Pf6N2E2_3309 0.66 +0.5
3,823,483 - Pf6N2E2_3309 0.70 +0.6
3,823,506 + Pf6N2E2_3309 0.71 +0.1
3,823,506 + Pf6N2E2_3309 0.71 +0.7
3,823,507 - Pf6N2E2_3309 0.71 -0.3
3,823,515 + Pf6N2E2_3309 0.72 +0.1
3,823,515 + Pf6N2E2_3309 0.72 +1.5
3,823,539 + Pf6N2E2_3309 0.74 +0.5
3,823,539 + Pf6N2E2_3309 0.74 -0.1
3,823,539 + Pf6N2E2_3309 0.74 -0.4
3,823,540 - Pf6N2E2_3309 0.74 -0.1
3,823,540 - Pf6N2E2_3309 0.74 -0.4
3,823,653 + Pf6N2E2_3309 0.82 -0.9
3,823,653 + Pf6N2E2_3309 0.82 -0.4
3,823,653 + Pf6N2E2_3309 0.82 +1.4
3,823,653 + Pf6N2E2_3309 0.82 -0.3
3,823,654 - Pf6N2E2_3309 0.82 -0.8
3,823,654 - Pf6N2E2_3309 0.82 -0.2
3,823,654 - Pf6N2E2_3309 0.82 +0.7
3,823,654 - Pf6N2E2_3309 0.82 +0.5
3,823,654 - Pf6N2E2_3309 0.82 +0.6
3,823,689 + Pf6N2E2_3309 0.85 -0.2
3,823,689 + Pf6N2E2_3309 0.85 +0.3
3,823,689 + Pf6N2E2_3309 0.85 +0.0
3,823,690 - Pf6N2E2_3309 0.85 +0.0
3,823,690 - Pf6N2E2_3309 0.85 +0.6
3,823,690 - Pf6N2E2_3309 0.85 -0.3
3,823,690 - Pf6N2E2_3309 0.85 -0.3
3,823,690 - Pf6N2E2_3309 0.85 -0.5
3,823,690 - Pf6N2E2_3309 0.85 +0.9
3,823,690 - Pf6N2E2_3309 0.85 +0.3
3,823,741 - Pf6N2E2_3309 0.88 +0.5
3,823,764 + -0.3
3,823,765 - +0.2
3,823,771 + +1.2
3,823,772 - -0.4
3,823,812 + +0.5
3,823,813 - +0.6
3,823,899 + -0.5
3,824,101 - +0.0
3,824,101 - +1.0
3,824,232 + Pf6N2E2_3310 0.16 +1.9
3,824,232 + Pf6N2E2_3310 0.16 +0.1
3,824,232 + Pf6N2E2_3310 0.16 +1.3
3,824,233 - Pf6N2E2_3310 0.16 -0.1
3,824,233 - Pf6N2E2_3310 0.16 -0.2
3,824,277 + Pf6N2E2_3310 0.19 +0.7
3,824,277 + Pf6N2E2_3310 0.19 +0.7
3,824,278 - Pf6N2E2_3310 0.19 -0.5
3,824,278 - Pf6N2E2_3310 0.19 -0.5
3,824,278 - Pf6N2E2_3310 0.19 -1.0
3,824,385 + Pf6N2E2_3310 0.26 +0.3
3,824,386 - Pf6N2E2_3310 0.26 +2.7
3,824,614 - Pf6N2E2_3310 0.40 +0.8
3,824,656 - Pf6N2E2_3310 0.43 -0.3
3,824,656 - Pf6N2E2_3310 0.43 -0.9
3,824,760 + Pf6N2E2_3310 0.49 +0.6
3,824,841 + Pf6N2E2_3310 0.54 -0.4
3,824,856 - Pf6N2E2_3310 0.55 +0.5
3,824,856 - Pf6N2E2_3310 0.55 -0.6
3,824,856 - Pf6N2E2_3310 0.55 -0.6
3,824,868 + Pf6N2E2_3310 0.56 -0.1
3,824,868 + Pf6N2E2_3310 0.56 +0.4
3,824,868 + Pf6N2E2_3310 0.56 +0.6
3,824,869 - Pf6N2E2_3310 0.56 +0.1
3,824,869 - Pf6N2E2_3310 0.56 -0.1
3,824,869 - Pf6N2E2_3310 0.56 +0.0
3,824,869 - Pf6N2E2_3310 0.56 +0.7
3,824,869 - Pf6N2E2_3310 0.56 +0.2
3,824,869 - Pf6N2E2_3310 0.56 -0.8
3,824,869 - Pf6N2E2_3310 0.56 +0.4
3,824,869 - Pf6N2E2_3310 0.56 +0.4

Or see this region's nucleotide sequence