Experiment: chromate 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3141 and Pf6N2E2_3142 are separated by 121 nucleotides Pf6N2E2_3142 and Pf6N2E2_3143 are separated by 104 nucleotides
Pf6N2E2_3141 - virulence sensor protein, at 3,633,161 to 3,634,531
_3141
Pf6N2E2_3142 - Threonine synthase (EC 4.2.3.1), at 3,634,653 to 3,636,062
_3142
Pf6N2E2_3143 - Homoserine dehydrogenase (EC 1.1.1.3), at 3,636,167 to 3,637,471
_3143
Position (kb)
3634
3635
3636
3637 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3633.816 kb on + strand, within Pf6N2E2_3141 at 3633.817 kb on - strand, within Pf6N2E2_3141 at 3633.817 kb on - strand, within Pf6N2E2_3141 at 3633.817 kb on - strand, within Pf6N2E2_3141 at 3633.851 kb on + strand, within Pf6N2E2_3141 at 3633.851 kb on + strand, within Pf6N2E2_3141 at 3633.851 kb on + strand, within Pf6N2E2_3141 at 3633.852 kb on - strand, within Pf6N2E2_3141 at 3633.852 kb on - strand, within Pf6N2E2_3141 at 3633.874 kb on - strand, within Pf6N2E2_3141 at 3633.909 kb on + strand, within Pf6N2E2_3141 at 3633.909 kb on + strand, within Pf6N2E2_3141 at 3633.909 kb on + strand, within Pf6N2E2_3141 at 3633.910 kb on - strand, within Pf6N2E2_3141 at 3633.910 kb on - strand, within Pf6N2E2_3141 at 3633.948 kb on + strand, within Pf6N2E2_3141 at 3633.948 kb on + strand, within Pf6N2E2_3141 at 3633.949 kb on - strand, within Pf6N2E2_3141 at 3633.949 kb on - strand, within Pf6N2E2_3141 at 3633.949 kb on - strand, within Pf6N2E2_3141 at 3633.949 kb on - strand, within Pf6N2E2_3141 at 3633.949 kb on - strand, within Pf6N2E2_3141 at 3633.981 kb on + strand, within Pf6N2E2_3141 at 3634.091 kb on + strand, within Pf6N2E2_3141 at 3634.091 kb on + strand, within Pf6N2E2_3141 at 3634.092 kb on - strand, within Pf6N2E2_3141 at 3634.320 kb on + strand, within Pf6N2E2_3141 at 3634.321 kb on - strand, within Pf6N2E2_3141 at 3634.395 kb on - strand at 3636.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction chromate 0.0000015625 M remove 3,633,816 + Pf6N2E2_3141 0.48 +0.9 3,633,817 - Pf6N2E2_3141 0.48 +0.2 3,633,817 - Pf6N2E2_3141 0.48 -0.4 3,633,817 - Pf6N2E2_3141 0.48 -0.3 3,633,851 + Pf6N2E2_3141 0.50 +0.4 3,633,851 + Pf6N2E2_3141 0.50 -1.2 3,633,851 + Pf6N2E2_3141 0.50 +1.8 3,633,852 - Pf6N2E2_3141 0.50 -0.0 3,633,852 - Pf6N2E2_3141 0.50 -0.5 3,633,874 - Pf6N2E2_3141 0.52 +0.3 3,633,909 + Pf6N2E2_3141 0.55 -0.4 3,633,909 + Pf6N2E2_3141 0.55 -1.9 3,633,909 + Pf6N2E2_3141 0.55 +0.6 3,633,910 - Pf6N2E2_3141 0.55 -0.3 3,633,910 - Pf6N2E2_3141 0.55 +0.1 3,633,948 + Pf6N2E2_3141 0.57 +0.7 3,633,948 + Pf6N2E2_3141 0.57 +0.7 3,633,949 - Pf6N2E2_3141 0.57 +0.6 3,633,949 - Pf6N2E2_3141 0.57 -0.6 3,633,949 - Pf6N2E2_3141 0.57 +0.8 3,633,949 - Pf6N2E2_3141 0.57 +0.3 3,633,949 - Pf6N2E2_3141 0.57 +0.4 3,633,981 + Pf6N2E2_3141 0.60 +0.1 3,634,091 + Pf6N2E2_3141 0.68 -0.3 3,634,091 + Pf6N2E2_3141 0.68 +0.0 3,634,092 - Pf6N2E2_3141 0.68 +1.6 3,634,320 + Pf6N2E2_3141 0.85 +0.4 3,634,321 - Pf6N2E2_3141 0.85 -0.4 3,634,395 - +0.5 3,636,169 - +0.6
Or see this region's nucleotide sequence