Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3142

Experiment: chromate 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3141 and Pf6N2E2_3142 are separated by 121 nucleotidesPf6N2E2_3142 and Pf6N2E2_3143 are separated by 104 nucleotides Pf6N2E2_3141 - virulence sensor protein, at 3,633,161 to 3,634,531 _3141 Pf6N2E2_3142 - Threonine synthase (EC 4.2.3.1), at 3,634,653 to 3,636,062 _3142 Pf6N2E2_3143 - Homoserine dehydrogenase (EC 1.1.1.3), at 3,636,167 to 3,637,471 _3143 Position (kb) 3634 3635 3636 3637Strain fitness (log2 ratio) -2 -1 0 1 2at 3633.816 kb on + strand, within Pf6N2E2_3141at 3633.817 kb on - strand, within Pf6N2E2_3141at 3633.817 kb on - strand, within Pf6N2E2_3141at 3633.817 kb on - strand, within Pf6N2E2_3141at 3633.851 kb on + strand, within Pf6N2E2_3141at 3633.851 kb on + strand, within Pf6N2E2_3141at 3633.851 kb on + strand, within Pf6N2E2_3141at 3633.852 kb on - strand, within Pf6N2E2_3141at 3633.852 kb on - strand, within Pf6N2E2_3141at 3633.874 kb on - strand, within Pf6N2E2_3141at 3633.909 kb on + strand, within Pf6N2E2_3141at 3633.909 kb on + strand, within Pf6N2E2_3141at 3633.909 kb on + strand, within Pf6N2E2_3141at 3633.910 kb on - strand, within Pf6N2E2_3141at 3633.910 kb on - strand, within Pf6N2E2_3141at 3633.948 kb on + strand, within Pf6N2E2_3141at 3633.948 kb on + strand, within Pf6N2E2_3141at 3633.949 kb on - strand, within Pf6N2E2_3141at 3633.949 kb on - strand, within Pf6N2E2_3141at 3633.949 kb on - strand, within Pf6N2E2_3141at 3633.949 kb on - strand, within Pf6N2E2_3141at 3633.949 kb on - strand, within Pf6N2E2_3141at 3633.981 kb on + strand, within Pf6N2E2_3141at 3634.091 kb on + strand, within Pf6N2E2_3141at 3634.091 kb on + strand, within Pf6N2E2_3141at 3634.092 kb on - strand, within Pf6N2E2_3141at 3634.320 kb on + strand, within Pf6N2E2_3141at 3634.321 kb on - strand, within Pf6N2E2_3141at 3634.395 kb on - strandat 3636.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
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3,633,816 + Pf6N2E2_3141 0.48 +0.9
3,633,817 - Pf6N2E2_3141 0.48 +0.2
3,633,817 - Pf6N2E2_3141 0.48 -0.4
3,633,817 - Pf6N2E2_3141 0.48 -0.3
3,633,851 + Pf6N2E2_3141 0.50 +0.4
3,633,851 + Pf6N2E2_3141 0.50 -1.2
3,633,851 + Pf6N2E2_3141 0.50 +1.8
3,633,852 - Pf6N2E2_3141 0.50 -0.0
3,633,852 - Pf6N2E2_3141 0.50 -0.5
3,633,874 - Pf6N2E2_3141 0.52 +0.3
3,633,909 + Pf6N2E2_3141 0.55 -0.4
3,633,909 + Pf6N2E2_3141 0.55 -1.9
3,633,909 + Pf6N2E2_3141 0.55 +0.6
3,633,910 - Pf6N2E2_3141 0.55 -0.3
3,633,910 - Pf6N2E2_3141 0.55 +0.1
3,633,948 + Pf6N2E2_3141 0.57 +0.7
3,633,948 + Pf6N2E2_3141 0.57 +0.7
3,633,949 - Pf6N2E2_3141 0.57 +0.6
3,633,949 - Pf6N2E2_3141 0.57 -0.6
3,633,949 - Pf6N2E2_3141 0.57 +0.8
3,633,949 - Pf6N2E2_3141 0.57 +0.3
3,633,949 - Pf6N2E2_3141 0.57 +0.4
3,633,981 + Pf6N2E2_3141 0.60 +0.1
3,634,091 + Pf6N2E2_3141 0.68 -0.3
3,634,091 + Pf6N2E2_3141 0.68 +0.0
3,634,092 - Pf6N2E2_3141 0.68 +1.6
3,634,320 + Pf6N2E2_3141 0.85 +0.4
3,634,321 - Pf6N2E2_3141 0.85 -0.4
3,634,395 - +0.5
3,636,169 - +0.6

Or see this region's nucleotide sequence