Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2163

Experiment: chromate 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2162 and Pf6N2E2_2163 are separated by 251 nucleotidesPf6N2E2_2163 and Pf6N2E2_2164 are separated by 31 nucleotides Pf6N2E2_2162 - Cytochrome c4, at 2,566,193 to 2,566,855 _2162 Pf6N2E2_2163 - Lysine 2,3-aminomutase (EC 5.4.3.2), at 2,567,107 to 2,568,504 _2163 Pf6N2E2_2164 - hypothetical protein, at 2,568,536 to 2,570,095 _2164 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -2 -1 0 1 2at 2566.110 kb on + strandat 2566.120 kb on - strandat 2566.270 kb on + strand, within Pf6N2E2_2162at 2566.270 kb on + strand, within Pf6N2E2_2162at 2566.628 kb on + strand, within Pf6N2E2_2162at 2566.628 kb on + strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.853 kb on + strandat 2566.870 kb on + strandat 2566.871 kb on - strandat 2566.874 kb on + strandat 2566.875 kb on - strandat 2566.875 kb on - strandat 2566.875 kb on - strandat 2566.912 kb on + strandat 2566.920 kb on + strandat 2566.920 kb on + strandat 2566.992 kb on + strandat 2567.074 kb on - strandat 2567.198 kb on + strandat 2567.313 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.426 kb on - strand, within Pf6N2E2_2163at 2567.426 kb on - strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.428 kb on - strand, within Pf6N2E2_2163at 2567.428 kb on - strand, within Pf6N2E2_2163at 2567.428 kb on - strand, within Pf6N2E2_2163at 2567.459 kb on - strand, within Pf6N2E2_2163at 2567.654 kb on - strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.739 kb on - strand, within Pf6N2E2_2163at 2567.739 kb on - strand, within Pf6N2E2_2163at 2567.739 kb on - strand, within Pf6N2E2_2163at 2567.765 kb on + strand, within Pf6N2E2_2163at 2567.765 kb on + strand, within Pf6N2E2_2163at 2567.765 kb on + strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.849 kb on + strand, within Pf6N2E2_2163at 2567.849 kb on + strand, within Pf6N2E2_2163at 2567.850 kb on - strand, within Pf6N2E2_2163at 2568.009 kb on - strand, within Pf6N2E2_2163at 2568.043 kb on + strand, within Pf6N2E2_2163at 2568.044 kb on - strand, within Pf6N2E2_2163at 2568.044 kb on - strand, within Pf6N2E2_2163at 2568.044 kb on - strand, within Pf6N2E2_2163at 2568.135 kb on - strand, within Pf6N2E2_2163at 2568.139 kb on + strand, within Pf6N2E2_2163at 2568.139 kb on + strand, within Pf6N2E2_2163at 2568.158 kb on - strand, within Pf6N2E2_2163at 2568.158 kb on - strand, within Pf6N2E2_2163at 2568.161 kb on - strand, within Pf6N2E2_2163at 2568.161 kb on - strand, within Pf6N2E2_2163at 2568.161 kb on - strand, within Pf6N2E2_2163at 2568.265 kb on - strand, within Pf6N2E2_2163at 2568.322 kb on - strand, within Pf6N2E2_2163at 2568.322 kb on - strand, within Pf6N2E2_2163at 2568.322 kb on - strand, within Pf6N2E2_2163at 2568.325 kb on + strand, within Pf6N2E2_2163at 2568.325 kb on + strand, within Pf6N2E2_2163at 2568.325 kb on + strand, within Pf6N2E2_2163at 2568.325 kb on + strand, within Pf6N2E2_2163at 2568.326 kb on - strand, within Pf6N2E2_2163at 2568.326 kb on - strand, within Pf6N2E2_2163at 2568.326 kb on - strand, within Pf6N2E2_2163at 2568.326 kb on - strand, within Pf6N2E2_2163at 2568.326 kb on - strand, within Pf6N2E2_2163at 2568.331 kb on + strand, within Pf6N2E2_2163at 2568.332 kb on - strand, within Pf6N2E2_2163at 2568.334 kb on + strand, within Pf6N2E2_2163at 2568.334 kb on + strand, within Pf6N2E2_2163at 2568.334 kb on + strand, within Pf6N2E2_2163at 2568.401 kb on - strandat 2568.401 kb on - strandat 2568.417 kb on + strandat 2568.486 kb on - strandat 2568.502 kb on + strandat 2568.502 kb on + strandat 2568.502 kb on + strandat 2568.502 kb on + strandat 2568.503 kb on - strandat 2568.503 kb on - strandat 2568.532 kb on - strandat 2568.571 kb on + strandat 2568.572 kb on - strandat 2568.572 kb on - strandat 2568.572 kb on - strandat 2568.572 kb on - strandat 2568.578 kb on + strandat 2568.578 kb on + strandat 2568.578 kb on + strandat 2568.579 kb on - strandat 2568.579 kb on - strandat 2568.579 kb on - strandat 2568.579 kb on - strandat 2568.579 kb on - strandat 2568.629 kb on + strandat 2568.630 kb on - strandat 2568.630 kb on - strandat 2568.630 kb on - strandat 2568.659 kb on - strandat 2568.697 kb on + strand, within Pf6N2E2_2164at 2568.842 kb on + strand, within Pf6N2E2_2164at 2568.842 kb on + strand, within Pf6N2E2_2164at 2568.842 kb on + strand, within Pf6N2E2_2164at 2568.843 kb on - strand, within Pf6N2E2_2164at 2568.847 kb on + strand, within Pf6N2E2_2164at 2568.847 kb on + strand, within Pf6N2E2_2164at 2568.847 kb on + strand, within Pf6N2E2_2164at 2568.992 kb on + strand, within Pf6N2E2_2164at 2569.103 kb on + strand, within Pf6N2E2_2164at 2569.254 kb on - strand, within Pf6N2E2_2164at 2569.289 kb on + strand, within Pf6N2E2_2164at 2569.289 kb on + strand, within Pf6N2E2_2164at 2569.290 kb on - strand, within Pf6N2E2_2164at 2569.466 kb on + strand, within Pf6N2E2_2164

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
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2,566,110 + +0.7
2,566,120 - -1.1
2,566,270 + Pf6N2E2_2162 0.12 +0.9
2,566,270 + Pf6N2E2_2162 0.12 -0.1
2,566,628 + Pf6N2E2_2162 0.66 -0.5
2,566,628 + Pf6N2E2_2162 0.66 +1.2
2,566,629 - Pf6N2E2_2162 0.66 -0.4
2,566,629 - Pf6N2E2_2162 0.66 -0.3
2,566,629 - Pf6N2E2_2162 0.66 +0.2
2,566,629 - Pf6N2E2_2162 0.66 +0.8
2,566,629 - Pf6N2E2_2162 0.66 +0.1
2,566,853 + +0.1
2,566,870 + +0.8
2,566,871 - +1.4
2,566,874 + -0.5
2,566,875 - -1.4
2,566,875 - +0.5
2,566,875 - +0.4
2,566,912 + +0.6
2,566,920 + -1.5
2,566,920 + +0.5
2,566,992 + -1.8
2,567,074 - +0.5
2,567,198 + +2.0
2,567,313 + Pf6N2E2_2163 0.15 +0.6
2,567,425 + Pf6N2E2_2163 0.23 -1.7
2,567,425 + Pf6N2E2_2163 0.23 -1.1
2,567,425 + Pf6N2E2_2163 0.23 -0.4
2,567,425 + Pf6N2E2_2163 0.23 -0.2
2,567,425 + Pf6N2E2_2163 0.23 -0.7
2,567,426 - Pf6N2E2_2163 0.23 +1.0
2,567,426 - Pf6N2E2_2163 0.23 +0.1
2,567,427 + Pf6N2E2_2163 0.23 -0.2
2,567,427 + Pf6N2E2_2163 0.23 -0.1
2,567,427 + Pf6N2E2_2163 0.23 +0.8
2,567,427 + Pf6N2E2_2163 0.23 -0.1
2,567,427 + Pf6N2E2_2163 0.23 +0.2
2,567,427 + Pf6N2E2_2163 0.23 +0.3
2,567,428 - Pf6N2E2_2163 0.23 -1.0
2,567,428 - Pf6N2E2_2163 0.23 -0.1
2,567,428 - Pf6N2E2_2163 0.23 +1.5
2,567,459 - Pf6N2E2_2163 0.25 -0.2
2,567,654 - Pf6N2E2_2163 0.39 +0.8
2,567,738 + Pf6N2E2_2163 0.45 +0.3
2,567,738 + Pf6N2E2_2163 0.45 +0.7
2,567,738 + Pf6N2E2_2163 0.45 +0.9
2,567,738 + Pf6N2E2_2163 0.45 +1.1
2,567,738 + Pf6N2E2_2163 0.45 +0.1
2,567,739 - Pf6N2E2_2163 0.45 -1.6
2,567,739 - Pf6N2E2_2163 0.45 +1.0
2,567,739 - Pf6N2E2_2163 0.45 +0.2
2,567,765 + Pf6N2E2_2163 0.47 +0.3
2,567,765 + Pf6N2E2_2163 0.47 -0.6
2,567,765 + Pf6N2E2_2163 0.47 +1.0
2,567,766 - Pf6N2E2_2163 0.47 +1.3
2,567,766 - Pf6N2E2_2163 0.47 -0.5
2,567,766 - Pf6N2E2_2163 0.47 +0.7
2,567,766 - Pf6N2E2_2163 0.47 +0.5
2,567,766 - Pf6N2E2_2163 0.47 +0.7
2,567,766 - Pf6N2E2_2163 0.47 -0.2
2,567,849 + Pf6N2E2_2163 0.53 +1.2
2,567,849 + Pf6N2E2_2163 0.53 -1.3
2,567,850 - Pf6N2E2_2163 0.53 +0.3
2,568,009 - Pf6N2E2_2163 0.65 +1.0
2,568,043 + Pf6N2E2_2163 0.67 -0.4
2,568,044 - Pf6N2E2_2163 0.67 +0.2
2,568,044 - Pf6N2E2_2163 0.67 +0.4
2,568,044 - Pf6N2E2_2163 0.67 +0.6
2,568,135 - Pf6N2E2_2163 0.74 -0.1
2,568,139 + Pf6N2E2_2163 0.74 +0.3
2,568,139 + Pf6N2E2_2163 0.74 +0.1
2,568,158 - Pf6N2E2_2163 0.75 -0.0
2,568,158 - Pf6N2E2_2163 0.75 +0.8
2,568,161 - Pf6N2E2_2163 0.75 -1.7
2,568,161 - Pf6N2E2_2163 0.75 +0.9
2,568,161 - Pf6N2E2_2163 0.75 -0.2
2,568,265 - Pf6N2E2_2163 0.83 -0.5
2,568,322 - Pf6N2E2_2163 0.87 +0.5
2,568,322 - Pf6N2E2_2163 0.87 -0.4
2,568,322 - Pf6N2E2_2163 0.87 -2.3
2,568,325 + Pf6N2E2_2163 0.87 -0.2
2,568,325 + Pf6N2E2_2163 0.87 +0.8
2,568,325 + Pf6N2E2_2163 0.87 -0.7
2,568,325 + Pf6N2E2_2163 0.87 -0.3
2,568,326 - Pf6N2E2_2163 0.87 +0.7
2,568,326 - Pf6N2E2_2163 0.87 +0.8
2,568,326 - Pf6N2E2_2163 0.87 +0.6
2,568,326 - Pf6N2E2_2163 0.87 +0.6
2,568,326 - Pf6N2E2_2163 0.87 -0.1
2,568,331 + Pf6N2E2_2163 0.88 -0.6
2,568,332 - Pf6N2E2_2163 0.88 +0.4
2,568,334 + Pf6N2E2_2163 0.88 -1.8
2,568,334 + Pf6N2E2_2163 0.88 -1.3
2,568,334 + Pf6N2E2_2163 0.88 -0.7
2,568,401 - +0.2
2,568,401 - -0.9
2,568,417 + +0.4
2,568,486 - +0.9
2,568,502 + -0.3
2,568,502 + +0.7
2,568,502 + -0.2
2,568,502 + +0.0
2,568,503 - +0.3
2,568,503 - -0.8
2,568,532 - -0.4
2,568,571 + +0.5
2,568,572 - -1.4
2,568,572 - +0.2
2,568,572 - +0.4
2,568,572 - +0.1
2,568,578 + -0.7
2,568,578 + -0.4
2,568,578 + +0.2
2,568,579 - +0.0
2,568,579 - -0.2
2,568,579 - +0.3
2,568,579 - -0.5
2,568,579 - -0.9
2,568,629 + -2.4
2,568,630 - +0.8
2,568,630 - +0.8
2,568,630 - +0.4
2,568,659 - -0.1
2,568,697 + Pf6N2E2_2164 0.10 +0.6
2,568,842 + Pf6N2E2_2164 0.20 -0.1
2,568,842 + Pf6N2E2_2164 0.20 +0.5
2,568,842 + Pf6N2E2_2164 0.20 +1.0
2,568,843 - Pf6N2E2_2164 0.20 +0.2
2,568,847 + Pf6N2E2_2164 0.20 -1.2
2,568,847 + Pf6N2E2_2164 0.20 +0.9
2,568,847 + Pf6N2E2_2164 0.20 -0.3
2,568,992 + Pf6N2E2_2164 0.29 +1.7
2,569,103 + Pf6N2E2_2164 0.36 +0.5
2,569,254 - Pf6N2E2_2164 0.46 -0.2
2,569,289 + Pf6N2E2_2164 0.48 -1.2
2,569,289 + Pf6N2E2_2164 0.48 +0.7
2,569,290 - Pf6N2E2_2164 0.48 -0.5
2,569,466 + Pf6N2E2_2164 0.60 -1.1

Or see this region's nucleotide sequence