Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1409

Experiment: chromate 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1409 and Pf6N2E2_1410 are separated by 146 nucleotides Pf6N2E2_1409 - Excinuclease ABC subunit A paralog of unknown function, at 1,652,459 to 1,655,116 _1409 Pf6N2E2_1410 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 1,655,263 to 1,656,651 _1410 Position (kb) 1652 1653 1654 1655 1656Strain fitness (log2 ratio) -2 -1 0 1 2at 1651.490 kb on + strandat 1651.569 kb on - strandat 1651.587 kb on - strandat 1652.224 kb on + strandat 1652.224 kb on + strandat 1652.375 kb on + strandat 1652.375 kb on + strandat 1652.376 kb on - strandat 1652.376 kb on - strandat 1652.376 kb on - strandat 1652.376 kb on - strandat 1652.642 kb on + strandat 1652.664 kb on - strandat 1652.664 kb on - strandat 1652.685 kb on - strandat 1652.841 kb on - strand, within Pf6N2E2_1409at 1652.951 kb on + strand, within Pf6N2E2_1409at 1652.952 kb on - strand, within Pf6N2E2_1409at 1652.952 kb on - strand, within Pf6N2E2_1409at 1653.075 kb on - strand, within Pf6N2E2_1409at 1653.162 kb on - strand, within Pf6N2E2_1409at 1653.162 kb on - strand, within Pf6N2E2_1409at 1653.162 kb on - strandat 1653.162 kb on - strand, within Pf6N2E2_1409at 1653.162 kb on - strand, within Pf6N2E2_1409at 1653.162 kb on - strand, within Pf6N2E2_1409at 1653.221 kb on + strand, within Pf6N2E2_1409at 1653.311 kb on + strand, within Pf6N2E2_1409at 1653.311 kb on + strand, within Pf6N2E2_1409at 1653.312 kb on - strand, within Pf6N2E2_1409at 1653.312 kb on - strand, within Pf6N2E2_1409at 1653.312 kb on - strand, within Pf6N2E2_1409at 1653.312 kb on - strand, within Pf6N2E2_1409at 1653.312 kb on - strand, within Pf6N2E2_1409at 1653.465 kb on - strand, within Pf6N2E2_1409at 1653.681 kb on - strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.779 kb on + strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.780 kb on - strand, within Pf6N2E2_1409at 1653.969 kb on - strand, within Pf6N2E2_1409at 1653.969 kb on - strand, within Pf6N2E2_1409at 1654.023 kb on - strand, within Pf6N2E2_1409at 1654.391 kb on + strand, within Pf6N2E2_1409at 1654.391 kb on + strand, within Pf6N2E2_1409at 1654.841 kb on + strand, within Pf6N2E2_1409at 1654.841 kb on + strand, within Pf6N2E2_1409at 1654.841 kb on + strand, within Pf6N2E2_1409at 1654.841 kb on + strand, within Pf6N2E2_1409at 1654.841 kb on + strand, within Pf6N2E2_1409at 1654.841 kb on + strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.842 kb on - strand, within Pf6N2E2_1409at 1654.900 kb on - strandat 1655.176 kb on + strandat 1655.176 kb on + strandat 1655.189 kb on + strandat 1655.439 kb on - strand, within Pf6N2E2_1410at 1655.445 kb on + strand, within Pf6N2E2_1410at 1655.445 kb on + strand, within Pf6N2E2_1410at 1655.595 kb on - strand, within Pf6N2E2_1410at 1655.597 kb on + strand, within Pf6N2E2_1410at 1655.597 kb on + strand, within Pf6N2E2_1410at 1655.597 kb on + strand, within Pf6N2E2_1410at 1655.627 kb on + strand, within Pf6N2E2_1410at 1655.627 kb on + strand, within Pf6N2E2_1410at 1655.628 kb on - strand, within Pf6N2E2_1410at 1655.628 kb on - strand, within Pf6N2E2_1410at 1655.697 kb on - strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.784 kb on - strand, within Pf6N2E2_1410at 1655.784 kb on - strand, within Pf6N2E2_1410at 1655.784 kb on - strand, within Pf6N2E2_1410at 1655.909 kb on + strand, within Pf6N2E2_1410at 1655.909 kb on + strand, within Pf6N2E2_1410at 1655.909 kb on + strand, within Pf6N2E2_1410at 1655.916 kb on - strand, within Pf6N2E2_1410at 1655.916 kb on - strand, within Pf6N2E2_1410at 1656.000 kb on - strand, within Pf6N2E2_1410at 1656.000 kb on - strand, within Pf6N2E2_1410at 1656.000 kb on - strand, within Pf6N2E2_1410

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
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1,651,490 + +0.3
1,651,569 - -0.0
1,651,587 - -1.3
1,652,224 + +0.2
1,652,224 + -2.1
1,652,375 + -0.1
1,652,375 + +0.3
1,652,376 - -1.0
1,652,376 - -0.2
1,652,376 - -0.7
1,652,376 - -0.0
1,652,642 + -0.2
1,652,664 - -0.9
1,652,664 - +1.1
1,652,685 - +0.4
1,652,841 - Pf6N2E2_1409 0.14 +0.0
1,652,951 + Pf6N2E2_1409 0.19 -0.9
1,652,952 - Pf6N2E2_1409 0.19 +0.0
1,652,952 - Pf6N2E2_1409 0.19 +0.4
1,653,075 - Pf6N2E2_1409 0.23 +1.0
1,653,162 - Pf6N2E2_1409 0.26 +0.2
1,653,162 - Pf6N2E2_1409 0.26 +0.9
1,653,162 - -0.5
1,653,162 - Pf6N2E2_1409 0.26 -0.2
1,653,162 - Pf6N2E2_1409 0.26 -1.0
1,653,162 - Pf6N2E2_1409 0.26 -0.4
1,653,221 + Pf6N2E2_1409 0.29 +0.5
1,653,311 + Pf6N2E2_1409 0.32 -0.7
1,653,311 + Pf6N2E2_1409 0.32 -0.3
1,653,312 - Pf6N2E2_1409 0.32 -0.3
1,653,312 - Pf6N2E2_1409 0.32 -0.2
1,653,312 - Pf6N2E2_1409 0.32 -0.3
1,653,312 - Pf6N2E2_1409 0.32 +0.5
1,653,312 - Pf6N2E2_1409 0.32 -0.0
1,653,465 - Pf6N2E2_1409 0.38 -0.2
1,653,681 - Pf6N2E2_1409 0.46 +0.1
1,653,779 + Pf6N2E2_1409 0.50 +0.5
1,653,779 + Pf6N2E2_1409 0.50 -0.2
1,653,779 + Pf6N2E2_1409 0.50 -0.4
1,653,779 + Pf6N2E2_1409 0.50 +0.0
1,653,779 + Pf6N2E2_1409 0.50 -0.3
1,653,779 + Pf6N2E2_1409 0.50 +1.7
1,653,779 + Pf6N2E2_1409 0.50 -0.6
1,653,780 - Pf6N2E2_1409 0.50 +0.7
1,653,780 - Pf6N2E2_1409 0.50 -0.6
1,653,780 - Pf6N2E2_1409 0.50 -0.2
1,653,780 - Pf6N2E2_1409 0.50 -0.1
1,653,780 - Pf6N2E2_1409 0.50 -1.6
1,653,780 - Pf6N2E2_1409 0.50 +0.3
1,653,780 - Pf6N2E2_1409 0.50 +0.3
1,653,780 - Pf6N2E2_1409 0.50 +0.6
1,653,780 - Pf6N2E2_1409 0.50 +0.2
1,653,780 - Pf6N2E2_1409 0.50 +0.1
1,653,969 - Pf6N2E2_1409 0.57 -0.4
1,653,969 - Pf6N2E2_1409 0.57 -0.6
1,654,023 - Pf6N2E2_1409 0.59 -0.6
1,654,391 + Pf6N2E2_1409 0.73 +1.9
1,654,391 + Pf6N2E2_1409 0.73 -0.0
1,654,841 + Pf6N2E2_1409 0.90 +0.2
1,654,841 + Pf6N2E2_1409 0.90 +0.1
1,654,841 + Pf6N2E2_1409 0.90 +1.3
1,654,841 + Pf6N2E2_1409 0.90 -0.3
1,654,841 + Pf6N2E2_1409 0.90 +0.4
1,654,841 + Pf6N2E2_1409 0.90 +0.4
1,654,842 - Pf6N2E2_1409 0.90 -0.0
1,654,842 - Pf6N2E2_1409 0.90 -0.9
1,654,842 - Pf6N2E2_1409 0.90 +0.3
1,654,842 - Pf6N2E2_1409 0.90 -0.3
1,654,842 - Pf6N2E2_1409 0.90 +1.0
1,654,842 - Pf6N2E2_1409 0.90 -0.4
1,654,842 - Pf6N2E2_1409 0.90 +0.3
1,654,900 - +0.2
1,655,176 + -0.1
1,655,176 + +0.4
1,655,189 + +0.4
1,655,439 - Pf6N2E2_1410 0.13 -0.8
1,655,445 + Pf6N2E2_1410 0.13 +0.2
1,655,445 + Pf6N2E2_1410 0.13 -0.8
1,655,595 - Pf6N2E2_1410 0.24 +0.6
1,655,597 + Pf6N2E2_1410 0.24 +0.1
1,655,597 + Pf6N2E2_1410 0.24 +0.1
1,655,597 + Pf6N2E2_1410 0.24 -0.5
1,655,627 + Pf6N2E2_1410 0.26 +0.1
1,655,627 + Pf6N2E2_1410 0.26 +0.9
1,655,628 - Pf6N2E2_1410 0.26 -0.1
1,655,628 - Pf6N2E2_1410 0.26 -0.7
1,655,697 - Pf6N2E2_1410 0.31 +0.5
1,655,783 + Pf6N2E2_1410 0.37 +0.0
1,655,783 + Pf6N2E2_1410 0.37 +1.2
1,655,783 + Pf6N2E2_1410 0.37 +0.5
1,655,783 + Pf6N2E2_1410 0.37 -0.6
1,655,784 - Pf6N2E2_1410 0.38 -1.9
1,655,784 - Pf6N2E2_1410 0.38 +0.7
1,655,784 - Pf6N2E2_1410 0.38 +0.6
1,655,909 + Pf6N2E2_1410 0.47 -0.2
1,655,909 + Pf6N2E2_1410 0.47 -0.1
1,655,909 + Pf6N2E2_1410 0.47 +0.4
1,655,916 - Pf6N2E2_1410 0.47 +0.6
1,655,916 - Pf6N2E2_1410 0.47 -0.5
1,656,000 - Pf6N2E2_1410 0.53 +0.7
1,656,000 - Pf6N2E2_1410 0.53 -0.7
1,656,000 - Pf6N2E2_1410 0.53 -0.4

Or see this region's nucleotide sequence