Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06521

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06520 and H281DRAFT_06521 are separated by 36 nucleotidesH281DRAFT_06521 and H281DRAFT_06522 are separated by 27 nucleotidesH281DRAFT_06522 and H281DRAFT_06523 overlap by 193 nucleotides H281DRAFT_06520: H281DRAFT_06520 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 534 to 1,478 _06520 H281DRAFT_06521: H281DRAFT_06521 - magnesium chelatase subunit ChlD-like protein, at 1,515 to 1,955 _06521 H281DRAFT_06522: H281DRAFT_06522 - hypothetical protein, at 1,983 to 2,420 _06522 H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310 _06523 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 1.066 kb on - strand, within H281DRAFT_06520at 1.176 kb on + strand, within H281DRAFT_06520at 1.176 kb on + strand, within H281DRAFT_06520at 1.176 kb on + strand, within H281DRAFT_06520at 1.177 kb on - strand, within H281DRAFT_06520at 1.177 kb on - strand, within H281DRAFT_06520at 1.177 kb on - strand, within H281DRAFT_06520at 1.177 kb on - strand, within H281DRAFT_06520at 1.309 kb on + strand, within H281DRAFT_06520at 1.309 kb on + strand, within H281DRAFT_06520at 1.309 kb on + strand, within H281DRAFT_06520at 1.310 kb on - strand, within H281DRAFT_06520at 1.310 kb on - strand, within H281DRAFT_06520at 1.411 kb on + strandat 1.412 kb on - strandat 1.513 kb on + strandat 1.514 kb on - strandat 1.618 kb on - strand, within H281DRAFT_06521at 2.298 kb on + strandat 2.344 kb on + strandat 2.410 kb on + strandat 2.564 kb on - strand, within H281DRAFT_06523at 2.649 kb on + strand, within H281DRAFT_06523at 2.703 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
1,066 - H281DRAFT_06520 0.56 +0.6
1,176 + H281DRAFT_06520 0.68 -0.8
1,176 + H281DRAFT_06520 0.68 +0.0
1,176 + H281DRAFT_06520 0.68 +0.2
1,177 - H281DRAFT_06520 0.68 +0.2
1,177 - H281DRAFT_06520 0.68 +0.8
1,177 - H281DRAFT_06520 0.68 -0.4
1,177 - H281DRAFT_06520 0.68 +0.6
1,309 + H281DRAFT_06520 0.82 +1.8
1,309 + H281DRAFT_06520 0.82 +0.6
1,309 + H281DRAFT_06520 0.82 -1.3
1,310 - H281DRAFT_06520 0.82 -2.6
1,310 - H281DRAFT_06520 0.82 +1.0
1,411 + -0.3
1,412 - -0.5
1,513 + +0.6
1,514 - +0.2
1,618 - H281DRAFT_06521 0.23 -2.2
2,298 + -2.6
2,344 + +0.5
2,410 + -2.1
2,564 - H281DRAFT_06523 0.31 -0.3
2,649 + H281DRAFT_06523 0.39 -2.0
2,703 + H281DRAFT_06523 0.44 -0.3
2,857 + H281DRAFT_06523 0.58 +0.8
2,857 + H281DRAFT_06523 0.58 -2.6

Or see this region's nucleotide sequence