Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04223

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04222 and H281DRAFT_04223 are separated by 224 nucleotidesH281DRAFT_04223 and H281DRAFT_04224 are separated by 109 nucleotides H281DRAFT_04222: H281DRAFT_04222 - ATP-dependent RNA helicase RhlE, at 341,221 to 342,753 _04222 H281DRAFT_04223: H281DRAFT_04223 - hypothetical protein, at 342,978 to 343,499 _04223 H281DRAFT_04224: H281DRAFT_04224 - Fatty acid desaturase, at 343,609 to 344,436 _04224 Position (kb) 342 343 344Strain fitness (log2 ratio) -1 0 1 2 3at 342.211 kb on + strand, within H281DRAFT_04222at 342.341 kb on + strand, within H281DRAFT_04222at 342.342 kb on - strand, within H281DRAFT_04222at 342.815 kb on - strandat 342.864 kb on + strandat 342.864 kb on + strandat 342.864 kb on + strandat 342.865 kb on - strandat 342.865 kb on - strandat 342.899 kb on + strandat 342.900 kb on - strandat 342.901 kb on + strandat 342.902 kb on - strandat 343.070 kb on + strand, within H281DRAFT_04223at 343.070 kb on + strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.136 kb on + strand, within H281DRAFT_04223at 343.137 kb on - strand, within H281DRAFT_04223at 343.137 kb on - strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.139 kb on - strand, within H281DRAFT_04223at 343.139 kb on - strand, within H281DRAFT_04223at 343.202 kb on - strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.576 kb on - strandat 343.576 kb on - strandat 343.649 kb on + strandat 343.650 kb on - strandat 343.728 kb on + strand, within H281DRAFT_04224at 343.772 kb on + strand, within H281DRAFT_04224at 343.773 kb on - strand, within H281DRAFT_04224at 343.858 kb on + strandat 343.859 kb on - strand, within H281DRAFT_04224at 343.916 kb on + strand, within H281DRAFT_04224at 343.916 kb on + strand, within H281DRAFT_04224at 343.917 kb on - strand, within H281DRAFT_04224at 343.917 kb on - strand, within H281DRAFT_04224at 343.917 kb on - strand, within H281DRAFT_04224at 343.928 kb on + strand, within H281DRAFT_04224at 343.946 kb on + strand, within H281DRAFT_04224at 343.947 kb on - strand, within H281DRAFT_04224at 343.947 kb on - strand, within H281DRAFT_04224at 344.027 kb on + strand, within H281DRAFT_04224at 344.120 kb on + strand, within H281DRAFT_04224at 344.121 kb on - strand, within H281DRAFT_04224at 344.136 kb on + strand, within H281DRAFT_04224at 344.160 kb on - strand, within H281DRAFT_04224at 344.175 kb on - strand, within H281DRAFT_04224at 344.183 kb on + strand, within H281DRAFT_04224at 344.183 kb on + strand, within H281DRAFT_04224at 344.184 kb on - strand, within H281DRAFT_04224at 344.284 kb on - strand, within H281DRAFT_04224at 344.291 kb on + strand, within H281DRAFT_04224at 344.291 kb on + strand, within H281DRAFT_04224at 344.292 kb on - strand, within H281DRAFT_04224at 344.338 kb on + strand, within H281DRAFT_04224at 344.339 kb on - strand, within H281DRAFT_04224at 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.390 kb on - strandat 344.390 kb on - strandat 344.491 kb on + strandat 344.491 kb on + strandat 344.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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342,211 + H281DRAFT_04222 0.65 -1.2
342,341 + H281DRAFT_04222 0.73 +0.4
342,342 - H281DRAFT_04222 0.73 -0.3
342,815 - +0.4
342,864 + +0.4
342,864 + +0.7
342,864 + +0.1
342,865 - +0.5
342,865 - +1.7
342,899 + -1.2
342,900 - -0.3
342,901 + -0.9
342,902 - -0.4
343,070 + H281DRAFT_04223 0.18 -0.8
343,070 + H281DRAFT_04223 0.18 -0.0
343,071 - H281DRAFT_04223 0.18 -0.0
343,071 - H281DRAFT_04223 0.18 -0.0
343,071 - H281DRAFT_04223 0.18 +0.0
343,136 + H281DRAFT_04223 0.30 -0.0
343,137 - H281DRAFT_04223 0.30 -0.6
343,137 - H281DRAFT_04223 0.30 -0.5
343,138 + H281DRAFT_04223 0.31 +0.3
343,138 + H281DRAFT_04223 0.31 +0.5
343,138 + H281DRAFT_04223 0.31 -0.0
343,139 - H281DRAFT_04223 0.31 -0.1
343,139 - H281DRAFT_04223 0.31 -0.2
343,202 - H281DRAFT_04223 0.43 +3.1
343,315 + H281DRAFT_04223 0.65 -1.0
343,315 + H281DRAFT_04223 0.65 +0.4
343,315 + H281DRAFT_04223 0.65 +1.0
343,316 - H281DRAFT_04223 0.65 +0.3
343,316 - H281DRAFT_04223 0.65 +0.1
343,316 - H281DRAFT_04223 0.65 -0.6
343,316 - H281DRAFT_04223 0.65 +1.4
343,576 - -0.6
343,576 - +0.3
343,649 + +0.5
343,650 - -0.6
343,728 + H281DRAFT_04224 0.14 +1.1
343,772 + H281DRAFT_04224 0.20 -0.6
343,773 - H281DRAFT_04224 0.20 +0.4
343,858 + +2.3
343,859 - H281DRAFT_04224 0.30 -1.4
343,916 + H281DRAFT_04224 0.37 +0.7
343,916 + H281DRAFT_04224 0.37 +0.1
343,917 - H281DRAFT_04224 0.37 +0.3
343,917 - H281DRAFT_04224 0.37 +1.9
343,917 - H281DRAFT_04224 0.37 +0.1
343,928 + H281DRAFT_04224 0.39 -0.2
343,946 + H281DRAFT_04224 0.41 +0.8
343,947 - H281DRAFT_04224 0.41 +0.2
343,947 - H281DRAFT_04224 0.41 +1.8
344,027 + H281DRAFT_04224 0.50 +0.9
344,120 + H281DRAFT_04224 0.62 +1.5
344,121 - H281DRAFT_04224 0.62 +1.3
344,136 + H281DRAFT_04224 0.64 -0.1
344,160 - H281DRAFT_04224 0.67 -0.2
344,175 - H281DRAFT_04224 0.68 +1.1
344,183 + H281DRAFT_04224 0.69 -0.2
344,183 + H281DRAFT_04224 0.69 +0.0
344,184 - H281DRAFT_04224 0.69 +0.7
344,284 - H281DRAFT_04224 0.82 +0.7
344,291 + H281DRAFT_04224 0.82 -0.2
344,291 + H281DRAFT_04224 0.82 +1.3
344,292 - H281DRAFT_04224 0.82 -0.2
344,338 + H281DRAFT_04224 0.88 +0.4
344,339 - H281DRAFT_04224 0.88 -0.4
344,389 + +0.5
344,389 + +1.4
344,389 + -1.4
344,389 + +0.1
344,389 + -0.1
344,389 + +0.1
344,389 + +0.3
344,389 + +0.4
344,390 - +0.8
344,390 - -0.2
344,491 + -0.2
344,491 + +0.4
344,492 - -0.0

Or see this region's nucleotide sequence