Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03800

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03798 and H281DRAFT_03799 are separated by 16 nucleotidesH281DRAFT_03799 and H281DRAFT_03800 are separated by 37 nucleotidesH281DRAFT_03800 and H281DRAFT_03801 are separated by 226 nucleotidesH281DRAFT_03801 and H281DRAFT_03802 overlap by 11 nucleotides H281DRAFT_03798: H281DRAFT_03798 - NitT/TauT family transport system permease protein, at 319,127 to 319,990 _03798 H281DRAFT_03799: H281DRAFT_03799 - NitT/TauT family transport system ATP-binding protein, at 320,007 to 320,801 _03799 H281DRAFT_03800: H281DRAFT_03800 - NitT/TauT family transport system substrate-binding protein, at 320,839 to 321,858 _03800 H281DRAFT_03801: H281DRAFT_03801 - two component transcriptional regulator, winged helix family, at 322,085 to 322,822 _03801 H281DRAFT_03802: H281DRAFT_03802 - two-component system, OmpR family, sensor histidine kinase TctE, at 322,812 to 324,206 _03802 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2 3at 320.789 kb on + strandat 320.789 kb on + strandat 320.885 kb on + strandat 321.048 kb on - strand, within H281DRAFT_03800at 321.050 kb on + strand, within H281DRAFT_03800at 321.411 kb on - strand, within H281DRAFT_03800at 321.588 kb on + strand, within H281DRAFT_03800at 321.610 kb on + strand, within H281DRAFT_03800at 321.929 kb on + strandat 322.033 kb on + strandat 322.633 kb on + strand, within H281DRAFT_03801at 322.721 kb on + strand, within H281DRAFT_03801at 322.724 kb on - strand, within H281DRAFT_03801at 322.820 kb on + strandat 322.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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320,789 + -1.4
320,789 + +0.3
320,885 + +0.2
321,048 - H281DRAFT_03800 0.20 +0.1
321,050 + H281DRAFT_03800 0.21 +3.0
321,411 - H281DRAFT_03800 0.56 -0.1
321,588 + H281DRAFT_03800 0.73 +0.6
321,610 + H281DRAFT_03800 0.76 -2.2
321,929 + +0.2
322,033 + -0.6
322,633 + H281DRAFT_03801 0.74 +0.9
322,721 + H281DRAFT_03801 0.86 +1.1
322,724 - H281DRAFT_03801 0.87 -0.3
322,820 + -1.7
322,820 + -0.1

Or see this region's nucleotide sequence