Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03748 and H281DRAFT_03749 are separated by 27 nucleotides H281DRAFT_03749 and H281DRAFT_03750 are separated by 63 nucleotides H281DRAFT_03750 and H281DRAFT_03751 are separated by 4 nucleotides
H281DRAFT_03748: H281DRAFT_03748 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 264,323 to 265,096
_03748
H281DRAFT_03749: H281DRAFT_03749 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 265,124 to 266,206
_03749
H281DRAFT_03750: H281DRAFT_03750 - transcriptional regulator, RpiR family, at 266,270 to 267,130
_03750
H281DRAFT_03751: H281DRAFT_03751 - transcriptional regulator, IclR family, at 267,135 to 267,980
_03751
Position (kb) 265
266
267 Strain fitness (log2 ratio) -1
0
1 at 264.174 kb on - strand at 264.277 kb on - strand at 264.659 kb on + strand, within H281DRAFT_03748 at 264.659 kb on + strand, within H281DRAFT_03748 at 264.660 kb on - strand, within H281DRAFT_03748 at 264.660 kb on - strand, within H281DRAFT_03748 at 264.765 kb on - strand, within H281DRAFT_03748 at 264.932 kb on + strand, within H281DRAFT_03748 at 265.161 kb on - strand at 265.382 kb on + strand, within H281DRAFT_03749 at 266.165 kb on - strand at 266.165 kb on - strand at 266.516 kb on + strand, within H281DRAFT_03750 at 266.786 kb on + strand, within H281DRAFT_03750 at 266.925 kb on + strand, within H281DRAFT_03750 at 266.941 kb on + strand, within H281DRAFT_03750 at 266.944 kb on - strand, within H281DRAFT_03750 at 266.944 kb on - strand, within H281DRAFT_03750 at 267.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 264,174 - +1.0 264,277 - -0.6 264,659 + H281DRAFT_03748 0.43 +0.7 264,659 + H281DRAFT_03748 0.43 +1.2 264,660 - H281DRAFT_03748 0.44 +0.0 264,660 - H281DRAFT_03748 0.44 +0.1 264,765 - H281DRAFT_03748 0.57 -0.2 264,932 + H281DRAFT_03748 0.79 +1.1 265,161 - +1.0 265,382 + H281DRAFT_03749 0.24 +1.3 266,165 - -0.1 266,165 - +0.5 266,516 + H281DRAFT_03750 0.29 +0.3 266,786 + H281DRAFT_03750 0.60 -0.8 266,925 + H281DRAFT_03750 0.76 +0.1 266,941 + H281DRAFT_03750 0.78 -1.0 266,944 - H281DRAFT_03750 0.78 +1.2 266,944 - H281DRAFT_03750 0.78 +0.3 267,099 + -0.5
Or see this region's nucleotide sequence