Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03686 and H281DRAFT_03687 are separated by 200 nucleotides H281DRAFT_03687 and H281DRAFT_03688 are separated by 21 nucleotides H281DRAFT_03688 and H281DRAFT_03689 overlap by 94 nucleotides H281DRAFT_03689 and H281DRAFT_03690 are separated by 147 nucleotides
H281DRAFT_03686: H281DRAFT_03686 - GntR family transcriptional regulator / MocR family aminotransferase, at 200,344 to 201,855
_03686
H281DRAFT_03687: H281DRAFT_03687 - hypothetical protein, at 202,056 to 202,454
_03687
H281DRAFT_03688: H281DRAFT_03688 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 202,476 to 203,120
_03688
H281DRAFT_03689: H281DRAFT_03689 - Ribosomal protein S18 acetylase RimI, at 203,027 to 203,554
_03689
H281DRAFT_03690: H281DRAFT_03690 - Uncharacterized conserved protein, at 203,702 to 204,151
_03690
Position (kb) 202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.536 kb on + strand, within H281DRAFT_03686 at 201.537 kb on - strand, within H281DRAFT_03686 at 201.537 kb on - strand, within H281DRAFT_03686 at 201.538 kb on + strand, within H281DRAFT_03686 at 201.599 kb on + strand at 201.693 kb on - strand, within H281DRAFT_03686 at 201.769 kb on - strand at 201.769 kb on - strand at 201.769 kb on - strand at 201.891 kb on - strand at 202.364 kb on - strand, within H281DRAFT_03687 at 202.521 kb on - strand at 202.567 kb on + strand, within H281DRAFT_03688 at 202.567 kb on + strand, within H281DRAFT_03688 at 202.739 kb on - strand, within H281DRAFT_03688 at 202.974 kb on + strand, within H281DRAFT_03688 at 202.974 kb on + strand, within H281DRAFT_03688 at 203.029 kb on - strand at 203.029 kb on - strand at 203.160 kb on + strand, within H281DRAFT_03689 at 203.160 kb on + strand, within H281DRAFT_03689 at 203.161 kb on - strand, within H281DRAFT_03689 at 203.161 kb on - strand, within H281DRAFT_03689 at 203.291 kb on + strand, within H281DRAFT_03689 at 203.291 kb on + strand, within H281DRAFT_03689 at 203.295 kb on + strand, within H281DRAFT_03689 at 203.296 kb on - strand, within H281DRAFT_03689 at 203.296 kb on - strand, within H281DRAFT_03689 at 203.296 kb on - strand, within H281DRAFT_03689 at 203.296 kb on - strand, within H281DRAFT_03689 at 203.311 kb on - strand, within H281DRAFT_03689 at 203.340 kb on + strand, within H281DRAFT_03689 at 203.478 kb on + strand, within H281DRAFT_03689 at 203.479 kb on - strand, within H281DRAFT_03689 at 203.609 kb on + strand at 203.609 kb on + strand at 203.610 kb on - strand at 203.610 kb on - strand at 203.656 kb on - strand at 203.656 kb on - strand at 203.656 kb on - strand at 203.703 kb on + strand at 203.706 kb on + strand at 203.801 kb on + strand, within H281DRAFT_03690 at 203.802 kb on - strand, within H281DRAFT_03690 at 203.887 kb on - strand, within H281DRAFT_03690 at 203.954 kb on + strand, within H281DRAFT_03690 at 203.954 kb on + strand, within H281DRAFT_03690 at 204.037 kb on + strand, within H281DRAFT_03690 at 204.037 kb on + strand, within H281DRAFT_03690 at 204.037 kb on + strand, within H281DRAFT_03690 at 204.038 kb on - strand, within H281DRAFT_03690 at 204.038 kb on - strand, within H281DRAFT_03690
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 201,536 + H281DRAFT_03686 0.79 +0.1 201,537 - H281DRAFT_03686 0.79 -0.3 201,537 - H281DRAFT_03686 0.79 -0.3 201,538 + H281DRAFT_03686 0.79 -0.5 201,599 + +0.8 201,693 - H281DRAFT_03686 0.89 -0.2 201,769 - -1.0 201,769 - +0.4 201,769 - +0.1 201,891 - -0.9 202,364 - H281DRAFT_03687 0.77 +0.8 202,521 - -0.2 202,567 + H281DRAFT_03688 0.14 -0.8 202,567 + H281DRAFT_03688 0.14 +1.2 202,739 - H281DRAFT_03688 0.41 -1.6 202,974 + H281DRAFT_03688 0.77 +0.5 202,974 + H281DRAFT_03688 0.77 -0.9 203,029 - -1.3 203,029 - +1.1 203,160 + H281DRAFT_03689 0.25 +1.8 203,160 + H281DRAFT_03689 0.25 +0.1 203,161 - H281DRAFT_03689 0.25 +0.9 203,161 - H281DRAFT_03689 0.25 +0.7 203,291 + H281DRAFT_03689 0.50 -0.4 203,291 + H281DRAFT_03689 0.50 -0.1 203,295 + H281DRAFT_03689 0.51 -0.3 203,296 - H281DRAFT_03689 0.51 +0.0 203,296 - H281DRAFT_03689 0.51 -0.2 203,296 - H281DRAFT_03689 0.51 -1.1 203,296 - H281DRAFT_03689 0.51 +0.1 203,311 - H281DRAFT_03689 0.54 -1.5 203,340 + H281DRAFT_03689 0.59 +1.9 203,478 + H281DRAFT_03689 0.85 +1.4 203,479 - H281DRAFT_03689 0.86 +0.8 203,609 + -0.8 203,609 + +0.7 203,610 - -3.6 203,610 - -1.1 203,656 - -0.1 203,656 - +0.2 203,656 - +0.3 203,703 + +0.3 203,706 + +0.6 203,801 + H281DRAFT_03690 0.22 -0.9 203,802 - H281DRAFT_03690 0.22 -2.6 203,887 - H281DRAFT_03690 0.41 -1.3 203,954 + H281DRAFT_03690 0.56 +0.7 203,954 + H281DRAFT_03690 0.56 +0.3 204,037 + H281DRAFT_03690 0.74 -0.5 204,037 + H281DRAFT_03690 0.74 -0.3 204,037 + H281DRAFT_03690 0.74 -0.8 204,038 - H281DRAFT_03690 0.75 +0.8 204,038 - H281DRAFT_03690 0.75 +2.5
Or see this region's nucleotide sequence