Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02576 and H281DRAFT_02577 are separated by 30 nucleotides H281DRAFT_02577 and H281DRAFT_02578 are separated by 45 nucleotides H281DRAFT_02578 and H281DRAFT_02579 are separated by 10 nucleotides
H281DRAFT_02576: H281DRAFT_02576 - transcriptional regulator, IclR family, at 151,297 to 152,088
_02576
H281DRAFT_02577: H281DRAFT_02577 - Sugar phosphate isomerase/epimerase, at 152,119 to 152,934
_02577
H281DRAFT_02578: H281DRAFT_02578 - hydroxyquinol 1,2-dioxygenase, at 152,980 to 153,846
_02578
H281DRAFT_02579: H281DRAFT_02579 - maleylacetate reductase, at 153,857 to 154,942
_02579
Position (kb) 152
153
154 Strain fitness (log2 ratio) -1
0
1 at 152.120 kb on + strand at 152.157 kb on + strand at 152.526 kb on - strand, within H281DRAFT_02577 at 152.526 kb on - strand, within H281DRAFT_02577 at 152.656 kb on - strand, within H281DRAFT_02577 at 152.953 kb on + strand at 153.156 kb on + strand, within H281DRAFT_02578 at 154.476 kb on + strand, within H281DRAFT_02579 at 154.477 kb on - strand, within H281DRAFT_02579 at 154.572 kb on + strand, within H281DRAFT_02579
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 152,120 + +0.3 152,157 + -0.3 152,526 - H281DRAFT_02577 0.50 -0.1 152,526 - H281DRAFT_02577 0.50 +1.1 152,656 - H281DRAFT_02577 0.66 -0.3 152,953 + -0.9 153,156 + H281DRAFT_02578 0.20 +0.1 154,476 + H281DRAFT_02579 0.57 +0.6 154,477 - H281DRAFT_02579 0.57 -0.0 154,572 + H281DRAFT_02579 0.66 +0.3
Or see this region's nucleotide sequence