Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02285

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02282 and H281DRAFT_02283 are separated by 138 nucleotidesH281DRAFT_02283 and H281DRAFT_02284 are separated by 133 nucleotidesH281DRAFT_02284 and H281DRAFT_02285 overlap by 11 nucleotidesH281DRAFT_02285 and H281DRAFT_02286 are separated by 570 nucleotides H281DRAFT_02282: H281DRAFT_02282 - hypothetical protein, at 427,558 to 428,106 _02282 H281DRAFT_02283: H281DRAFT_02283 - hypothetical protein, at 428,245 to 428,460 _02283 H281DRAFT_02284: H281DRAFT_02284 - hypothetical protein, at 428,594 to 428,917 _02284 H281DRAFT_02285: H281DRAFT_02285 - Phage integrase family protein, at 428,907 to 430,307 _02285 H281DRAFT_02286: H281DRAFT_02286 - catecholate siderophore receptor, at 430,878 to 433,091 _02286 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 428.108 kb on + strandat 428.109 kb on - strandat 428.109 kb on - strandat 428.152 kb on - strandat 428.186 kb on + strandat 428.203 kb on - strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.223 kb on - strandat 428.223 kb on - strandat 428.272 kb on + strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.436 kb on - strand, within H281DRAFT_02283at 428.466 kb on + strandat 428.474 kb on + strandat 428.527 kb on + strandat 428.608 kb on + strandat 428.609 kb on - strandat 428.641 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.832 kb on - strand, within H281DRAFT_02284at 429.062 kb on - strand, within H281DRAFT_02285at 429.089 kb on + strand, within H281DRAFT_02285at 429.109 kb on - strand, within H281DRAFT_02285at 429.213 kb on - strand, within H281DRAFT_02285at 429.364 kb on - strand, within H281DRAFT_02285at 429.380 kb on - strand, within H281DRAFT_02285at 429.432 kb on + strand, within H281DRAFT_02285at 429.433 kb on - strand, within H281DRAFT_02285at 429.433 kb on - strand, within H281DRAFT_02285at 429.433 kb on - strand, within H281DRAFT_02285at 429.530 kb on + strand, within H281DRAFT_02285at 429.530 kb on + strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.534 kb on + strand, within H281DRAFT_02285at 429.535 kb on - strand, within H281DRAFT_02285at 429.651 kb on - strand, within H281DRAFT_02285at 429.652 kb on + strand, within H281DRAFT_02285at 429.652 kb on + strand, within H281DRAFT_02285at 429.652 kb on + strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.671 kb on + strand, within H281DRAFT_02285at 429.677 kb on + strand, within H281DRAFT_02285at 429.678 kb on - strand, within H281DRAFT_02285at 429.678 kb on - strand, within H281DRAFT_02285at 429.679 kb on + strand, within H281DRAFT_02285at 429.679 kb on + strand, within H281DRAFT_02285at 429.679 kb on + strand, within H281DRAFT_02285at 429.680 kb on - strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.744 kb on - strand, within H281DRAFT_02285at 429.882 kb on + strand, within H281DRAFT_02285at 429.883 kb on - strand, within H281DRAFT_02285at 429.883 kb on - strand, within H281DRAFT_02285at 429.936 kb on - strand, within H281DRAFT_02285at 429.949 kb on + strand, within H281DRAFT_02285at 429.949 kb on + strand, within H281DRAFT_02285at 429.949 kb on + strand, within H281DRAFT_02285at 429.949 kb on + strand, within H281DRAFT_02285at 429.949 kb on + strand, within H281DRAFT_02285at 429.950 kb on - strand, within H281DRAFT_02285at 429.950 kb on - strand, within H281DRAFT_02285at 429.950 kb on - strand, within H281DRAFT_02285at 429.950 kb on - strand, within H281DRAFT_02285at 430.036 kb on - strand, within H281DRAFT_02285at 430.036 kb on - strand, within H281DRAFT_02285at 430.036 kb on - strand, within H281DRAFT_02285at 430.062 kb on + strand, within H281DRAFT_02285at 430.174 kb on + strandat 430.174 kb on + strandat 430.174 kb on + strandat 430.175 kb on - strandat 430.175 kb on - strandat 430.234 kb on + strandat 430.235 kb on - strandat 430.235 kb on - strandat 430.322 kb on + strandat 430.322 kb on + strandat 430.322 kb on + strandat 430.323 kb on - strandat 430.323 kb on - strandat 430.323 kb on - strandat 430.363 kb on - strandat 430.404 kb on + strandat 430.404 kb on + strandat 430.405 kb on - strandat 430.405 kb on - strandat 430.419 kb on - strandat 430.419 kb on - strandat 430.419 kb on - strandat 430.426 kb on + strandat 430.448 kb on + strandat 430.448 kb on + strandat 430.449 kb on - strandat 430.545 kb on - strandat 430.545 kb on - strandat 430.545 kb on - strandat 430.545 kb on - strandat 430.730 kb on + strandat 430.730 kb on + strandat 430.733 kb on + strandat 430.734 kb on - strandat 430.935 kb on + strandat 430.936 kb on - strandat 431.003 kb on - strandat 431.290 kb on - strand, within H281DRAFT_02286at 431.290 kb on - strand, within H281DRAFT_02286at 431.290 kb on - strand, within H281DRAFT_02286

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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428,108 + +0.6
428,109 - -0.5
428,109 - -1.0
428,152 - -0.1
428,186 + -1.0
428,203 - +0.2
428,222 + +0.5
428,222 + -0.6
428,222 + +0.5
428,223 - -0.2
428,223 - +0.2
428,272 + H281DRAFT_02283 0.12 +0.2
428,417 - H281DRAFT_02283 0.80 -0.7
428,417 - H281DRAFT_02283 0.80 +1.3
428,435 + H281DRAFT_02283 0.88 +0.4
428,435 + H281DRAFT_02283 0.88 -0.1
428,436 - H281DRAFT_02283 0.88 +0.8
428,466 + +0.6
428,474 + +0.6
428,527 + +0.3
428,608 + -0.8
428,609 - +2.7
428,641 + H281DRAFT_02284 0.15 -0.2
428,706 + H281DRAFT_02284 0.35 -3.3
428,706 + H281DRAFT_02284 0.35 +0.8
428,706 + H281DRAFT_02284 0.35 -1.1
428,832 - H281DRAFT_02284 0.73 +0.7
429,062 - H281DRAFT_02285 0.11 +0.1
429,089 + H281DRAFT_02285 0.13 +0.9
429,109 - H281DRAFT_02285 0.14 -0.3
429,213 - H281DRAFT_02285 0.22 +0.2
429,364 - H281DRAFT_02285 0.33 -0.3
429,380 - H281DRAFT_02285 0.34 +0.1
429,432 + H281DRAFT_02285 0.37 +0.3
429,433 - H281DRAFT_02285 0.38 -0.2
429,433 - H281DRAFT_02285 0.38 -0.2
429,433 - H281DRAFT_02285 0.38 -1.0
429,530 + H281DRAFT_02285 0.44 -0.7
429,530 + H281DRAFT_02285 0.44 +0.6
429,531 - H281DRAFT_02285 0.45 -0.4
429,531 - H281DRAFT_02285 0.45 -0.4
429,531 - H281DRAFT_02285 0.45 +0.1
429,531 - H281DRAFT_02285 0.45 -0.8
429,534 + H281DRAFT_02285 0.45 -1.3
429,535 - H281DRAFT_02285 0.45 -0.1
429,651 - H281DRAFT_02285 0.53 +0.1
429,652 + H281DRAFT_02285 0.53 +1.0
429,652 + H281DRAFT_02285 0.53 +0.0
429,652 + H281DRAFT_02285 0.53 +0.6
429,653 - H281DRAFT_02285 0.53 -1.0
429,653 - H281DRAFT_02285 0.53 +0.4
429,653 - H281DRAFT_02285 0.53 -0.4
429,653 - H281DRAFT_02285 0.53 +0.8
429,653 - H281DRAFT_02285 0.53 -0.5
429,653 - H281DRAFT_02285 0.53 +0.9
429,671 + H281DRAFT_02285 0.55 +0.2
429,677 + H281DRAFT_02285 0.55 +0.7
429,678 - H281DRAFT_02285 0.55 +0.2
429,678 - H281DRAFT_02285 0.55 +0.5
429,679 + H281DRAFT_02285 0.55 +0.8
429,679 + H281DRAFT_02285 0.55 -0.5
429,679 + H281DRAFT_02285 0.55 -2.0
429,680 - H281DRAFT_02285 0.55 -2.0
429,743 + H281DRAFT_02285 0.60 +0.3
429,743 + H281DRAFT_02285 0.60 +0.2
429,743 + H281DRAFT_02285 0.60 +0.9
429,743 + H281DRAFT_02285 0.60 +0.9
429,743 + H281DRAFT_02285 0.60 +0.1
429,744 - H281DRAFT_02285 0.60 -0.7
429,882 + H281DRAFT_02285 0.70 +0.2
429,883 - H281DRAFT_02285 0.70 +1.1
429,883 - H281DRAFT_02285 0.70 +0.2
429,936 - H281DRAFT_02285 0.73 +0.1
429,949 + H281DRAFT_02285 0.74 +1.1
429,949 + H281DRAFT_02285 0.74 +0.6
429,949 + H281DRAFT_02285 0.74 +0.3
429,949 + H281DRAFT_02285 0.74 +0.4
429,949 + H281DRAFT_02285 0.74 -0.3
429,950 - H281DRAFT_02285 0.74 +0.5
429,950 - H281DRAFT_02285 0.74 +0.2
429,950 - H281DRAFT_02285 0.74 +0.4
429,950 - H281DRAFT_02285 0.74 +0.7
430,036 - H281DRAFT_02285 0.81 -2.0
430,036 - H281DRAFT_02285 0.81 +0.7
430,036 - H281DRAFT_02285 0.81 -0.1
430,062 + H281DRAFT_02285 0.82 -1.2
430,174 + +0.5
430,174 + -0.5
430,174 + -1.0
430,175 - -2.3
430,175 - -0.3
430,234 + -0.7
430,235 - +0.5
430,235 - -0.7
430,322 + -0.6
430,322 + +0.0
430,322 + -0.2
430,323 - +0.2
430,323 - -1.0
430,323 - +0.8
430,363 - -0.2
430,404 + +0.5
430,404 + +1.7
430,405 - -0.1
430,405 - +0.1
430,419 - -0.3
430,419 - -0.6
430,419 - +0.3
430,426 + +1.0
430,448 + -0.6
430,448 + +0.2
430,449 - -0.2
430,545 - +0.5
430,545 - +0.2
430,545 - -2.1
430,545 - -1.2
430,730 + -1.2
430,730 + +0.8
430,733 + +1.3
430,734 - +0.3
430,935 + +1.1
430,936 - +1.3
431,003 - +0.9
431,290 - H281DRAFT_02286 0.19 +1.4
431,290 - H281DRAFT_02286 0.19 -0.5
431,290 - H281DRAFT_02286 0.19 +0.9

Or see this region's nucleotide sequence