Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02154 and H281DRAFT_02155 overlap by 4 nucleotides H281DRAFT_02155 and H281DRAFT_02156 are separated by 90 nucleotides H281DRAFT_02156 and H281DRAFT_02157 are separated by 148 nucleotides
H281DRAFT_02154: H281DRAFT_02154 - Glyoxylase, beta-lactamase superfamily II, at 294,098 to 294,742
_02154
H281DRAFT_02155: H281DRAFT_02155 - hypothetical protein, at 294,739 to 295,368
_02155
H281DRAFT_02156: H281DRAFT_02156 - transcriptional regulator, AsnC family, at 295,459 to 295,917
_02156
H281DRAFT_02157: H281DRAFT_02157 - cation diffusion facilitator family transporter, at 296,066 to 297,304
_02157
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 293.742 kb on + strand at 293.743 kb on - strand at 293.743 kb on - strand at 293.751 kb on + strand at 293.751 kb on + strand at 293.751 kb on + strand at 293.751 kb on + strand at 293.751 kb on + strand at 293.751 kb on + strand at 293.752 kb on - strand at 293.752 kb on - strand at 293.752 kb on - strand at 293.835 kb on + strand at 293.836 kb on - strand at 293.859 kb on + strand at 293.859 kb on + strand at 293.860 kb on - strand at 293.860 kb on - strand at 293.860 kb on - strand at 293.860 kb on - strand at 293.860 kb on - strand at 293.918 kb on + strand at 293.918 kb on + strand at 293.918 kb on + strand at 293.918 kb on + strand at 293.918 kb on + strand at 293.919 kb on - strand at 293.919 kb on - strand at 293.920 kb on + strand at 293.920 kb on + strand at 293.921 kb on - strand at 293.945 kb on + strand at 293.946 kb on - strand at 294.312 kb on - strand, within H281DRAFT_02154 at 294.436 kb on + strand, within H281DRAFT_02154 at 294.436 kb on + strand, within H281DRAFT_02154 at 294.437 kb on - strand, within H281DRAFT_02154 at 294.476 kb on + strand, within H281DRAFT_02154 at 294.476 kb on + strand, within H281DRAFT_02154 at 294.476 kb on + strand, within H281DRAFT_02154 at 294.476 kb on + strand, within H281DRAFT_02154 at 294.477 kb on - strand, within H281DRAFT_02154 at 294.477 kb on - strand, within H281DRAFT_02154 at 294.477 kb on - strand, within H281DRAFT_02154 at 294.494 kb on - strand, within H281DRAFT_02154 at 294.494 kb on - strand, within H281DRAFT_02154 at 294.494 kb on - strand, within H281DRAFT_02154 at 294.494 kb on - strand, within H281DRAFT_02154 at 294.706 kb on + strand at 294.707 kb on - strand at 294.707 kb on - strand at 294.707 kb on - strand at 294.716 kb on + strand at 294.716 kb on + strand at 294.716 kb on + strand at 294.717 kb on - strand at 294.754 kb on + strand at 294.754 kb on + strand at 294.755 kb on - strand at 294.755 kb on - strand at 294.755 kb on - strand at 294.755 kb on - strand at 294.755 kb on - strand at 294.829 kb on + strand, within H281DRAFT_02155 at 294.830 kb on - strand, within H281DRAFT_02155 at 294.831 kb on + strand, within H281DRAFT_02155 at 294.991 kb on + strand, within H281DRAFT_02155 at 294.992 kb on - strand, within H281DRAFT_02155 at 294.992 kb on - strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.063 kb on + strand, within H281DRAFT_02155 at 295.064 kb on - strand, within H281DRAFT_02155 at 295.064 kb on - strand, within H281DRAFT_02155 at 295.064 kb on - strand, within H281DRAFT_02155 at 295.064 kb on - strand, within H281DRAFT_02155 at 295.064 kb on - strand, within H281DRAFT_02155 at 295.064 kb on - strand, within H281DRAFT_02155 at 295.075 kb on + strand, within H281DRAFT_02155 at 295.076 kb on - strand, within H281DRAFT_02155 at 295.076 kb on - strand, within H281DRAFT_02155 at 295.076 kb on - strand, within H281DRAFT_02155 at 295.218 kb on + strand, within H281DRAFT_02155 at 295.218 kb on + strand, within H281DRAFT_02155 at 295.219 kb on - strand, within H281DRAFT_02155 at 295.219 kb on - strand, within H281DRAFT_02155 at 295.319 kb on + strand at 295.366 kb on + strand at 295.366 kb on + strand at 295.421 kb on + strand at 295.434 kb on + strand at 295.470 kb on + strand at 295.471 kb on - strand at 295.505 kb on + strand, within H281DRAFT_02156 at 295.505 kb on + strand, within H281DRAFT_02156 at 295.506 kb on - strand, within H281DRAFT_02156 at 295.612 kb on + strand, within H281DRAFT_02156 at 295.612 kb on + strand, within H281DRAFT_02156 at 295.612 kb on + strand, within H281DRAFT_02156 at 295.613 kb on - strand, within H281DRAFT_02156 at 295.750 kb on + strand, within H281DRAFT_02156 at 295.750 kb on + strand, within H281DRAFT_02156 at 295.751 kb on - strand, within H281DRAFT_02156 at 295.751 kb on - strand, within H281DRAFT_02156 at 295.774 kb on + strand, within H281DRAFT_02156 at 295.774 kb on + strand, within H281DRAFT_02156 at 295.775 kb on - strand, within H281DRAFT_02156 at 295.775 kb on - strand, within H281DRAFT_02156 at 295.775 kb on - strand, within H281DRAFT_02156 at 295.775 kb on - strand, within H281DRAFT_02156 at 295.775 kb on - strand, within H281DRAFT_02156 at 295.810 kb on + strand, within H281DRAFT_02156 at 295.810 kb on + strand, within H281DRAFT_02156 at 295.862 kb on + strand, within H281DRAFT_02156 at 295.863 kb on - strand, within H281DRAFT_02156 at 295.863 kb on - strand, within H281DRAFT_02156 at 295.907 kb on + strand at 295.948 kb on + strand at 295.948 kb on + strand at 295.948 kb on + strand at 295.948 kb on + strand at 295.948 kb on + strand at 295.949 kb on - strand at 295.949 kb on - strand at 295.949 kb on - strand at 295.949 kb on - strand at 295.967 kb on + strand at 296.067 kb on + strand at 296.067 kb on + strand at 296.067 kb on + strand at 296.068 kb on - strand at 296.068 kb on - strand at 296.068 kb on - strand at 296.068 kb on - strand at 296.168 kb on + strand at 296.168 kb on + strand at 296.169 kb on - strand at 296.307 kb on + strand, within H281DRAFT_02157 at 296.307 kb on + strand, within H281DRAFT_02157 at 296.307 kb on + strand, within H281DRAFT_02157 at 296.308 kb on - strand, within H281DRAFT_02157
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 293,742 + -0.8 293,743 - +1.1 293,743 - -0.7 293,751 + +0.6 293,751 + +0.3 293,751 + +1.4 293,751 + -0.5 293,751 + +0.9 293,751 + -0.0 293,752 - +1.1 293,752 - -0.5 293,752 - +0.2 293,835 + +0.2 293,836 - +0.9 293,859 + +1.0 293,859 + -0.4 293,860 - +1.2 293,860 - +1.2 293,860 - +1.5 293,860 - -1.3 293,860 - +0.4 293,918 + +0.4 293,918 + -0.2 293,918 + +1.4 293,918 + -1.2 293,918 + -0.5 293,919 - -1.1 293,919 - -2.9 293,920 + -0.4 293,920 + +0.5 293,921 - -1.4 293,945 + -0.4 293,946 - -0.4 294,312 - H281DRAFT_02154 0.33 +1.1 294,436 + H281DRAFT_02154 0.52 +1.8 294,436 + H281DRAFT_02154 0.52 -0.1 294,437 - H281DRAFT_02154 0.53 -0.3 294,476 + H281DRAFT_02154 0.59 +0.3 294,476 + H281DRAFT_02154 0.59 -0.4 294,476 + H281DRAFT_02154 0.59 -0.1 294,476 + H281DRAFT_02154 0.59 -0.6 294,477 - H281DRAFT_02154 0.59 -0.6 294,477 - H281DRAFT_02154 0.59 -1.5 294,477 - H281DRAFT_02154 0.59 -0.6 294,494 - H281DRAFT_02154 0.61 -0.6 294,494 - H281DRAFT_02154 0.61 -0.7 294,494 - H281DRAFT_02154 0.61 -0.8 294,494 - H281DRAFT_02154 0.61 +0.3 294,706 + -2.1 294,707 - +0.5 294,707 - +0.6 294,707 - +0.6 294,716 + -0.5 294,716 + +0.5 294,716 + +0.1 294,717 - +2.2 294,754 + -0.2 294,754 + -0.7 294,755 - +0.3 294,755 - -1.5 294,755 - +2.3 294,755 - -0.6 294,755 - -1.2 294,829 + H281DRAFT_02155 0.14 +0.8 294,830 - H281DRAFT_02155 0.14 +0.4 294,831 + H281DRAFT_02155 0.15 -1.4 294,991 + H281DRAFT_02155 0.40 +0.3 294,992 - H281DRAFT_02155 0.40 +0.8 294,992 - H281DRAFT_02155 0.40 -0.8 295,063 + H281DRAFT_02155 0.51 -0.3 295,063 + H281DRAFT_02155 0.51 -0.5 295,063 + H281DRAFT_02155 0.51 +0.4 295,063 + H281DRAFT_02155 0.51 +0.1 295,063 + H281DRAFT_02155 0.51 -0.8 295,063 + H281DRAFT_02155 0.51 -1.2 295,063 + H281DRAFT_02155 0.51 +0.4 295,064 - H281DRAFT_02155 0.52 +1.4 295,064 - H281DRAFT_02155 0.52 -0.4 295,064 - H281DRAFT_02155 0.52 -0.9 295,064 - H281DRAFT_02155 0.52 +0.8 295,064 - H281DRAFT_02155 0.52 -0.2 295,064 - H281DRAFT_02155 0.52 -0.1 295,075 + H281DRAFT_02155 0.53 -0.2 295,076 - H281DRAFT_02155 0.53 +0.1 295,076 - H281DRAFT_02155 0.53 -0.8 295,076 - H281DRAFT_02155 0.53 +0.8 295,218 + H281DRAFT_02155 0.76 -0.4 295,218 + H281DRAFT_02155 0.76 -1.1 295,219 - H281DRAFT_02155 0.76 -3.0 295,219 - H281DRAFT_02155 0.76 -0.6 295,319 + +0.5 295,366 + -0.1 295,366 + +0.5 295,421 + +1.3 295,434 + +0.2 295,470 + +2.2 295,471 - +0.5 295,505 + H281DRAFT_02156 0.10 +0.4 295,505 + H281DRAFT_02156 0.10 +1.3 295,506 - H281DRAFT_02156 0.10 +0.8 295,612 + H281DRAFT_02156 0.33 -0.2 295,612 + H281DRAFT_02156 0.33 +0.0 295,612 + H281DRAFT_02156 0.33 +0.6 295,613 - H281DRAFT_02156 0.34 +2.0 295,750 + H281DRAFT_02156 0.63 +0.2 295,750 + H281DRAFT_02156 0.63 +0.1 295,751 - H281DRAFT_02156 0.64 +1.1 295,751 - H281DRAFT_02156 0.64 +1.5 295,774 + H281DRAFT_02156 0.69 +0.5 295,774 + H281DRAFT_02156 0.69 +0.5 295,775 - H281DRAFT_02156 0.69 +0.5 295,775 - H281DRAFT_02156 0.69 +2.2 295,775 - H281DRAFT_02156 0.69 +0.1 295,775 - H281DRAFT_02156 0.69 -0.8 295,775 - H281DRAFT_02156 0.69 +1.6 295,810 + H281DRAFT_02156 0.76 +0.8 295,810 + H281DRAFT_02156 0.76 +0.9 295,862 + H281DRAFT_02156 0.88 +0.4 295,863 - H281DRAFT_02156 0.88 +0.9 295,863 - H281DRAFT_02156 0.88 +0.4 295,907 + +0.1 295,948 + -0.3 295,948 + +0.6 295,948 + -0.7 295,948 + -0.3 295,948 + +0.0 295,949 - -0.5 295,949 - +0.2 295,949 - -2.3 295,949 - +0.1 295,967 + +0.4 296,067 + -0.4 296,067 + +1.4 296,067 + +2.5 296,068 - +0.4 296,068 - -1.0 296,068 - -1.2 296,068 - -3.1 296,168 + +0.3 296,168 + +0.0 296,169 - +0.6 296,307 + H281DRAFT_02157 0.19 +0.8 296,307 + H281DRAFT_02157 0.19 -0.1 296,307 + H281DRAFT_02157 0.19 -0.8 296,308 - H281DRAFT_02157 0.20 -0.9
Or see this region's nucleotide sequence