Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01826

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01825 and H281DRAFT_01826 are separated by 884 nucleotidesH281DRAFT_01826 and H281DRAFT_01827 are separated by 166 nucleotidesH281DRAFT_01827 and H281DRAFT_01828 are separated by 434 nucleotides H281DRAFT_01825: H281DRAFT_01825 - Outer membrane protein (porin), at 730,727 to 731,869 _01825 H281DRAFT_01826: H281DRAFT_01826 - hypothetical protein, at 732,754 to 732,903 _01826 H281DRAFT_01827: H281DRAFT_01827 - hypothetical protein, at 733,070 to 733,276 _01827 H281DRAFT_01828: H281DRAFT_01828 - Sugar phosphate permease, at 733,711 to 735,030 _01828 Position (kb) 732 733Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 731.855 kb on - strandat 731.855 kb on - strandat 731.855 kb on - strandat 732.086 kb on - strandat 732.250 kb on + strandat 732.250 kb on + strandat 732.251 kb on - strandat 732.251 kb on - strandat 732.251 kb on - strandat 732.261 kb on + strandat 732.284 kb on + strandat 732.285 kb on - strandat 732.323 kb on + strandat 732.358 kb on - strandat 732.408 kb on + strandat 732.408 kb on + strandat 732.409 kb on - strandat 732.409 kb on - strandat 732.529 kb on + strandat 732.530 kb on - strandat 732.533 kb on + strandat 732.533 kb on + strandat 732.533 kb on + strandat 732.534 kb on - strandat 732.534 kb on - strandat 732.537 kb on + strandat 732.537 kb on + strandat 732.538 kb on - strandat 732.547 kb on + strandat 732.548 kb on - strandat 732.548 kb on - strandat 732.550 kb on + strandat 732.550 kb on + strandat 732.551 kb on - strandat 732.551 kb on - strandat 732.660 kb on + strandat 732.661 kb on - strandat 732.666 kb on - strandat 732.666 kb on - strandat 732.689 kb on + strandat 732.695 kb on + strandat 732.695 kb on + strandat 732.695 kb on + strandat 732.695 kb on + strandat 732.696 kb on - strandat 732.696 kb on - strandat 732.696 kb on - strandat 732.696 kb on - strandat 732.696 kb on - strandat 732.755 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 733.008 kb on + strandat 733.008 kb on + strandat 733.008 kb on + strandat 733.009 kb on - strandat 733.066 kb on + strandat 733.066 kb on + strandat 733.066 kb on + strandat 733.066 kb on + strandat 733.066 kb on + strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.067 kb on - strandat 733.140 kb on - strand, within H281DRAFT_01827at 733.371 kb on - strandat 733.566 kb on + strandat 733.566 kb on + strandat 733.807 kb on + strandat 733.807 kb on + strandat 733.808 kb on - strandat 733.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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731,855 - +0.7
731,855 - +0.2
731,855 - -0.1
732,086 - +0.1
732,250 + -0.3
732,250 + +0.8
732,251 - +1.1
732,251 - +0.9
732,251 - -0.4
732,261 + -0.2
732,284 + +0.3
732,285 - +0.1
732,323 + -0.2
732,358 - +0.2
732,408 + -0.2
732,408 + +0.6
732,409 - +0.2
732,409 - -0.1
732,529 + +2.0
732,530 - +0.3
732,533 + +1.2
732,533 + -0.7
732,533 + +0.4
732,534 - +0.3
732,534 - +1.9
732,537 + -0.1
732,537 + -0.6
732,538 - +0.2
732,547 + -1.0
732,548 - +0.4
732,548 - +0.4
732,550 + -0.3
732,550 + -0.1
732,551 - +0.8
732,551 - +0.2
732,660 + -1.1
732,661 - -1.5
732,666 - +0.3
732,666 - -0.3
732,689 + -1.4
732,695 + +0.5
732,695 + -2.8
732,695 + +1.2
732,695 + -0.5
732,696 - -0.1
732,696 - -0.0
732,696 - +0.1
732,696 - +0.5
732,696 - +0.0
732,755 + +0.0
732,954 + -0.8
732,954 + +0.6
733,008 + +0.0
733,008 + -0.4
733,008 + -0.1
733,009 - +0.4
733,066 + -0.1
733,066 + +0.5
733,066 + -1.0
733,066 + -0.5
733,066 + -2.1
733,067 - +1.2
733,067 - -0.1
733,067 - +1.1
733,067 - +0.7
733,067 - +0.4
733,067 - -0.3
733,067 - -0.0
733,067 - +0.7
733,140 - H281DRAFT_01827 0.34 +0.9
733,371 - -4.0
733,566 + -0.1
733,566 + -0.1
733,807 + -0.0
733,807 + +0.1
733,808 - -0.7
733,808 - -0.4

Or see this region's nucleotide sequence