Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01416

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01415 and H281DRAFT_01416 are separated by 267 nucleotidesH281DRAFT_01416 and H281DRAFT_01417 are separated by 311 nucleotidesH281DRAFT_01417 and H281DRAFT_01418 are separated by 106 nucleotides H281DRAFT_01415: H281DRAFT_01415 - hypothetical protein, at 267,774 to 267,989 _01415 H281DRAFT_01416: H281DRAFT_01416 - NADH dehydrogenase, at 268,257 to 269,486 _01416 H281DRAFT_01417: H281DRAFT_01417 - anti-sigma-28 factor, FlgM family, at 269,798 to 270,109 _01417 H281DRAFT_01418: H281DRAFT_01418 - Signal transduction histidine kinase, at 270,216 to 274,808 _01418 Position (kb) 268 269 270Strain fitness (log2 ratio) -1 0 1 2at 267.444 kb on + strandat 267.445 kb on - strandat 267.449 kb on + strandat 267.450 kb on - strandat 267.685 kb on + strandat 268.109 kb on - strandat 268.408 kb on - strand, within H281DRAFT_01416at 268.490 kb on + strand, within H281DRAFT_01416at 269.007 kb on - strand, within H281DRAFT_01416at 269.289 kb on - strand, within H281DRAFT_01416at 269.627 kb on + strandat 269.628 kb on - strandat 269.628 kb on - strandat 269.926 kb on + strand, within H281DRAFT_01417at 269.941 kb on + strand, within H281DRAFT_01417at 270.140 kb on + strandat 270.395 kb on + strandat 270.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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267,444 + +1.9
267,445 - -1.2
267,449 + -0.9
267,450 - +0.5
267,685 + +0.3
268,109 - +1.2
268,408 - H281DRAFT_01416 0.12 -0.1
268,490 + H281DRAFT_01416 0.19 +0.2
269,007 - H281DRAFT_01416 0.61 +0.3
269,289 - H281DRAFT_01416 0.84 -0.0
269,627 + +0.1
269,628 - +0.7
269,628 - +1.0
269,926 + H281DRAFT_01417 0.41 +0.8
269,941 + H281DRAFT_01417 0.46 +1.1
270,140 + +0.4
270,395 + +1.7
270,396 - +0.8

Or see this region's nucleotide sequence