Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01283

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01282 and H281DRAFT_01283 are separated by 68 nucleotidesH281DRAFT_01283 and H281DRAFT_01284 are separated by 118 nucleotides H281DRAFT_01282: H281DRAFT_01282 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 120,291 to 121,514 _01282 H281DRAFT_01283: H281DRAFT_01283 - Pimeloyl-ACP methyl ester carboxylesterase, at 121,583 to 122,434 _01283 H281DRAFT_01284: H281DRAFT_01284 - transcriptional regulator, LysR family, at 122,553 to 123,380 _01284 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1at 120.674 kb on + strand, within H281DRAFT_01282at 120.973 kb on - strand, within H281DRAFT_01282at 121.290 kb on - strand, within H281DRAFT_01282at 121.365 kb on - strand, within H281DRAFT_01282at 121.384 kb on - strand, within H281DRAFT_01282at 121.572 kb on + strandat 121.680 kb on + strand, within H281DRAFT_01283at 121.863 kb on - strand, within H281DRAFT_01283at 121.865 kb on - strand, within H281DRAFT_01283at 121.865 kb on - strand, within H281DRAFT_01283at 121.943 kb on + strand, within H281DRAFT_01283at 121.944 kb on - strand, within H281DRAFT_01283at 122.352 kb on + strandat 122.352 kb on + strandat 122.391 kb on - strandat 122.434 kb on + strandat 122.435 kb on - strandat 122.435 kb on - strandat 122.588 kb on + strandat 122.589 kb on - strandat 122.589 kb on - strandat 122.705 kb on - strand, within H281DRAFT_01284at 122.846 kb on - strand, within H281DRAFT_01284at 123.156 kb on + strand, within H281DRAFT_01284

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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120,674 + H281DRAFT_01282 0.31 -0.6
120,973 - H281DRAFT_01282 0.56 +1.0
121,290 - H281DRAFT_01282 0.82 -0.3
121,365 - H281DRAFT_01282 0.88 +0.8
121,384 - H281DRAFT_01282 0.89 -0.8
121,572 + +0.1
121,680 + H281DRAFT_01283 0.11 -3.0
121,863 - H281DRAFT_01283 0.33 -0.2
121,865 - H281DRAFT_01283 0.33 +0.5
121,865 - H281DRAFT_01283 0.33 +0.4
121,943 + H281DRAFT_01283 0.42 -0.5
121,944 - H281DRAFT_01283 0.42 +0.5
122,352 + +1.1
122,352 + -2.5
122,391 - +1.1
122,434 + -0.7
122,435 - -0.8
122,435 - -0.2
122,588 + +0.6
122,589 - -2.6
122,589 - -0.8
122,705 - H281DRAFT_01284 0.18 +0.4
122,846 - H281DRAFT_01284 0.35 +0.3
123,156 + H281DRAFT_01284 0.73 +0.9

Or see this region's nucleotide sequence