Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01189

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01188 and H281DRAFT_01189 are separated by 344 nucleotidesH281DRAFT_01189 and H281DRAFT_01190 are separated by 76 nucleotides H281DRAFT_01188: H281DRAFT_01188 - 3-oxoacyl-[acyl-carrier protein] reductase, at 24,757 to 25,509 _01188 H281DRAFT_01189: H281DRAFT_01189 - transcriptional regulator, AraC family, at 25,854 to 26,633 _01189 H281DRAFT_01190: H281DRAFT_01190 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 26,710 to 27,978 _01190 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.227 kb on + strand, within H281DRAFT_01188at 25.227 kb on + strand, within H281DRAFT_01188at 25.228 kb on - strand, within H281DRAFT_01188at 25.228 kb on - strand, within H281DRAFT_01188at 25.801 kb on - strandat 25.863 kb on - strandat 26.387 kb on + strand, within H281DRAFT_01189at 27.131 kb on + strand, within H281DRAFT_01190

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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25,227 + H281DRAFT_01188 0.62 -0.0
25,227 + H281DRAFT_01188 0.62 -1.6
25,228 - H281DRAFT_01188 0.63 +0.4
25,228 - H281DRAFT_01188 0.63 +1.9
25,801 - +1.0
25,863 - -3.2
26,387 + H281DRAFT_01189 0.68 +0.4
27,131 + H281DRAFT_01190 0.33 -0.6

Or see this region's nucleotide sequence