Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01188

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01187 and H281DRAFT_01188 are separated by 132 nucleotidesH281DRAFT_01188 and H281DRAFT_01189 are separated by 344 nucleotides H281DRAFT_01187: H281DRAFT_01187 - short chain enoyl-CoA hydratase (EC 4.2.1.17), at 23,827 to 24,624 _01187 H281DRAFT_01188: H281DRAFT_01188 - 3-oxoacyl-[acyl-carrier protein] reductase, at 24,757 to 25,509 _01188 H281DRAFT_01189: H281DRAFT_01189 - transcriptional regulator, AraC family, at 25,854 to 26,633 _01189 Position (kb) 24 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.162 kb on + strand, within H281DRAFT_01187at 24.217 kb on + strand, within H281DRAFT_01187at 25.227 kb on + strand, within H281DRAFT_01188at 25.227 kb on + strand, within H281DRAFT_01188at 25.228 kb on - strand, within H281DRAFT_01188at 25.228 kb on - strand, within H281DRAFT_01188at 25.801 kb on - strandat 25.863 kb on - strandat 26.387 kb on + strand, within H281DRAFT_01189

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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24,162 + H281DRAFT_01187 0.42 +0.3
24,217 + H281DRAFT_01187 0.49 -2.1
25,227 + H281DRAFT_01188 0.62 -0.0
25,227 + H281DRAFT_01188 0.62 -1.6
25,228 - H281DRAFT_01188 0.63 +0.4
25,228 - H281DRAFT_01188 0.63 +1.9
25,801 - +1.0
25,863 - -3.2
26,387 + H281DRAFT_01189 0.68 +0.4

Or see this region's nucleotide sequence