Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00071

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00070 and H281DRAFT_00071 are separated by 794 nucleotidesH281DRAFT_00071 and H281DRAFT_00072 are separated by 861 nucleotides H281DRAFT_00070: H281DRAFT_00070 - hypothetical protein, at 70,244 to 71,071 _00070 H281DRAFT_00071: H281DRAFT_00071 - Integrase, at 71,866 to 72,945 _00071 H281DRAFT_00072: H281DRAFT_00072 - hypothetical protein, at 73,807 to 74,418 _00072 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1at 70.894 kb on - strand, within H281DRAFT_00070at 71.163 kb on + strandat 71.252 kb on - strandat 71.332 kb on + strandat 71.332 kb on + strandat 71.342 kb on - strandat 72.086 kb on - strand, within H281DRAFT_00071at 72.194 kb on + strand, within H281DRAFT_00071at 72.767 kb on + strandat 72.768 kb on - strand, within H281DRAFT_00071at 72.768 kb on - strand, within H281DRAFT_00071at 72.768 kb on - strand, within H281DRAFT_00071at 72.768 kb on - strand, within H281DRAFT_00071at 72.833 kb on + strand, within H281DRAFT_00071at 72.939 kb on + strandat 72.939 kb on + strandat 72.946 kb on - strandat 72.980 kb on + strandat 72.981 kb on - strandat 72.981 kb on - strandat 72.981 kb on - strandat 73.122 kb on + strandat 73.122 kb on + strandat 73.182 kb on - strandat 73.251 kb on - strandat 73.251 kb on - strandat 73.272 kb on + strandat 73.273 kb on - strandat 73.339 kb on + strandat 73.339 kb on + strandat 73.456 kb on + strandat 73.456 kb on + strandat 73.457 kb on - strandat 73.472 kb on + strandat 73.473 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.570 kb on + strandat 73.570 kb on + strandat 73.570 kb on + strandat 73.571 kb on - strandat 73.641 kb on + strandat 73.644 kb on - strandat 73.666 kb on + strandat 73.720 kb on - strandat 73.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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70,894 - H281DRAFT_00070 0.79 -1.9
71,163 + -0.2
71,252 - +0.2
71,332 + +1.0
71,332 + -0.6
71,342 - +0.1
72,086 - H281DRAFT_00071 0.20 -0.1
72,194 + H281DRAFT_00071 0.30 +1.7
72,767 + -1.0
72,768 - H281DRAFT_00071 0.84 +1.3
72,768 - H281DRAFT_00071 0.84 +0.2
72,768 - H281DRAFT_00071 0.84 -0.8
72,768 - H281DRAFT_00071 0.84 -1.1
72,833 + H281DRAFT_00071 0.90 +0.7
72,939 + -0.4
72,939 + +0.9
72,946 - -0.8
72,980 + -0.7
72,981 - +0.4
72,981 - -1.6
72,981 - -0.3
73,122 + -0.6
73,122 + +1.3
73,182 - +1.0
73,251 - +1.1
73,251 - -1.0
73,272 + -0.1
73,273 - -0.2
73,339 + -2.3
73,339 + -0.5
73,456 + +1.3
73,456 + -0.4
73,457 - +1.7
73,472 + +0.3
73,473 - +0.7
73,488 - -0.0
73,488 - +0.6
73,570 + -2.7
73,570 + +0.7
73,570 + -0.0
73,571 - -0.3
73,641 + -0.8
73,644 - -0.5
73,666 + +0.0
73,720 - +0.7
73,851 - +0.8

Or see this region's nucleotide sequence