Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4032

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4031 and Ga0059261_4032 are separated by 245 nucleotidesGa0059261_4032 and Ga0059261_4033 are separated by 6 nucleotidesGa0059261_4033 and Ga0059261_4034 are separated by 252 nucleotides Ga0059261_4031: Ga0059261_4031 - 2-isopropylmalate synthase, yeast type, at 4,152,421 to 4,154,085 _4031 Ga0059261_4032: Ga0059261_4032 - Sensors of blue-light using FAD, at 4,154,331 to 4,154,732 _4032 Ga0059261_4033: Ga0059261_4033 - Uncharacterized conserved protein, at 4,154,739 to 4,155,380 _4033 Ga0059261_4034: Ga0059261_4034 - hypothetical protein, at 4,155,633 to 4,155,962 _4034 Position (kb) 4154 4155Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4153.348 kb on - strand, within Ga0059261_4031at 4153.403 kb on + strand, within Ga0059261_4031at 4153.403 kb on + strandat 4153.404 kb on - strand, within Ga0059261_4031at 4153.404 kb on - strand, within Ga0059261_4031at 4153.404 kb on - strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.421 kb on + strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.422 kb on - strand, within Ga0059261_4031at 4153.566 kb on - strandat 4153.566 kb on - strand, within Ga0059261_4031at 4153.566 kb on - strand, within Ga0059261_4031at 4153.703 kb on + strand, within Ga0059261_4031at 4153.703 kb on + strand, within Ga0059261_4031at 4153.703 kb on + strand, within Ga0059261_4031at 4153.703 kb on + strand, within Ga0059261_4031at 4153.703 kb on + strand, within Ga0059261_4031at 4153.703 kb on + strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4153.704 kb on - strand, within Ga0059261_4031at 4154.060 kb on + strandat 4154.136 kb on + strandat 4154.136 kb on + strandat 4154.136 kb on + strandat 4154.137 kb on - strandat 4154.137 kb on - strandat 4154.179 kb on + strandat 4154.189 kb on + strandat 4154.189 kb on + strandat 4154.190 kb on - strandat 4154.190 kb on - strandat 4154.240 kb on - strandat 4154.449 kb on + strandat 4154.449 kb on + strand, within Ga0059261_4032at 4154.449 kb on + strand, within Ga0059261_4032at 4154.450 kb on - strand, within Ga0059261_4032at 4154.450 kb on - strand, within Ga0059261_4032at 4154.514 kb on + strand, within Ga0059261_4032at 4154.514 kb on + strand, within Ga0059261_4032at 4154.514 kb on + strand, within Ga0059261_4032at 4154.515 kb on - strand, within Ga0059261_4032at 4154.515 kb on - strand, within Ga0059261_4032at 4154.515 kb on - strand, within Ga0059261_4032at 4154.515 kb on - strand, within Ga0059261_4032at 4154.515 kb on - strand, within Ga0059261_4032at 4154.711 kb on - strandat 4154.740 kb on + strandat 4154.740 kb on + strandat 4154.740 kb on + strandat 4154.741 kb on - strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.800 kb on + strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.801 kb on - strandat 4154.896 kb on + strand, within Ga0059261_4033at 4154.897 kb on - strand, within Ga0059261_4033at 4155.199 kb on + strand, within Ga0059261_4033at 4155.199 kb on + strand, within Ga0059261_4033at 4155.200 kb on - strand, within Ga0059261_4033at 4155.200 kb on - strand, within Ga0059261_4033at 4155.262 kb on + strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.263 kb on - strand, within Ga0059261_4033at 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.602 kb on + strandat 4155.603 kb on - strandat 4155.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,153,348 - Ga0059261_4031 0.56 -3.0
4,153,403 + Ga0059261_4031 0.59 -1.5
4,153,403 + -0.2
4,153,404 - Ga0059261_4031 0.59 -2.4
4,153,404 - Ga0059261_4031 0.59 -2.4
4,153,404 - Ga0059261_4031 0.59 -3.4
4,153,421 + Ga0059261_4031 0.60 -3.1
4,153,421 + Ga0059261_4031 0.60 -5.2
4,153,421 + Ga0059261_4031 0.60 -1.7
4,153,421 + Ga0059261_4031 0.60 -0.2
4,153,421 + Ga0059261_4031 0.60 -3.0
4,153,421 + Ga0059261_4031 0.60 -2.3
4,153,421 + Ga0059261_4031 0.60 -1.7
4,153,421 + Ga0059261_4031 0.60 -2.4
4,153,422 - Ga0059261_4031 0.60 -1.5
4,153,422 - Ga0059261_4031 0.60 -2.2
4,153,422 - Ga0059261_4031 0.60 -4.2
4,153,422 - Ga0059261_4031 0.60 -3.5
4,153,422 - Ga0059261_4031 0.60 -2.9
4,153,422 - Ga0059261_4031 0.60 -4.1
4,153,422 - Ga0059261_4031 0.60 -3.1
4,153,422 - Ga0059261_4031 0.60 -3.1
4,153,422 - Ga0059261_4031 0.60 -2.5
4,153,422 - Ga0059261_4031 0.60 -1.4
4,153,422 - Ga0059261_4031 0.60 -2.2
4,153,422 - Ga0059261_4031 0.60 -3.0
4,153,566 - +1.1
4,153,566 - Ga0059261_4031 0.69 -2.7
4,153,566 - Ga0059261_4031 0.69 -4.4
4,153,703 + Ga0059261_4031 0.77 -2.7
4,153,703 + Ga0059261_4031 0.77 -3.4
4,153,703 + Ga0059261_4031 0.77 -3.2
4,153,703 + Ga0059261_4031 0.77 -0.5
4,153,703 + Ga0059261_4031 0.77 -1.4
4,153,703 + Ga0059261_4031 0.77 -3.4
4,153,704 - Ga0059261_4031 0.77 -1.4
4,153,704 - Ga0059261_4031 0.77 -3.3
4,153,704 - Ga0059261_4031 0.77 -3.1
4,153,704 - Ga0059261_4031 0.77 -1.2
4,153,704 - Ga0059261_4031 0.77 -2.1
4,153,704 - Ga0059261_4031 0.77 -3.6
4,153,704 - Ga0059261_4031 0.77 -3.1
4,153,704 - Ga0059261_4031 0.77 -1.5
4,154,060 + -3.4
4,154,136 + -3.6
4,154,136 + -1.9
4,154,136 + -2.3
4,154,137 - -0.7
4,154,137 - -0.1
4,154,179 + -2.0
4,154,189 + -1.9
4,154,189 + -3.8
4,154,190 - -0.6
4,154,190 - -0.1
4,154,240 - +0.1
4,154,449 + +0.5
4,154,449 + Ga0059261_4032 0.29 -0.2
4,154,449 + Ga0059261_4032 0.29 +0.2
4,154,450 - Ga0059261_4032 0.30 -2.3
4,154,450 - Ga0059261_4032 0.30 +0.0
4,154,514 + Ga0059261_4032 0.46 +0.4
4,154,514 + Ga0059261_4032 0.46 +0.3
4,154,514 + Ga0059261_4032 0.46 -0.5
4,154,515 - Ga0059261_4032 0.46 +0.7
4,154,515 - Ga0059261_4032 0.46 +0.5
4,154,515 - Ga0059261_4032 0.46 -0.7
4,154,515 - Ga0059261_4032 0.46 -0.4
4,154,515 - Ga0059261_4032 0.46 +0.7
4,154,711 - +0.3
4,154,740 + -0.9
4,154,740 + +0.8
4,154,740 + -0.0
4,154,741 - +0.3
4,154,800 + -0.9
4,154,800 + -0.0
4,154,800 + -1.3
4,154,800 + -0.7
4,154,800 + -1.5
4,154,800 + -0.1
4,154,800 + +0.1
4,154,800 + +0.1
4,154,800 + -0.5
4,154,800 + -0.2
4,154,800 + -1.1
4,154,800 + +0.6
4,154,801 - +0.4
4,154,801 - -0.2
4,154,801 - +0.5
4,154,801 - +0.7
4,154,801 - -0.7
4,154,801 - -1.4
4,154,801 - +0.2
4,154,801 - -0.8
4,154,801 - -0.5
4,154,801 - -0.3
4,154,801 - +1.3
4,154,801 - -0.1
4,154,801 - -0.5
4,154,896 + Ga0059261_4033 0.24 +0.4
4,154,897 - Ga0059261_4033 0.25 -0.0
4,155,199 + Ga0059261_4033 0.72 +0.2
4,155,199 + Ga0059261_4033 0.72 +0.6
4,155,200 - Ga0059261_4033 0.72 -0.3
4,155,200 - Ga0059261_4033 0.72 +0.5
4,155,262 + Ga0059261_4033 0.81 -1.3
4,155,263 - Ga0059261_4033 0.82 +0.3
4,155,263 - Ga0059261_4033 0.82 +0.0
4,155,263 - Ga0059261_4033 0.82 -0.2
4,155,263 - Ga0059261_4033 0.82 -0.4
4,155,263 - Ga0059261_4033 0.82 +0.6
4,155,263 - Ga0059261_4033 0.82 +0.2
4,155,263 - Ga0059261_4033 0.82 -0.2
4,155,263 - Ga0059261_4033 0.82 -1.3
4,155,263 - Ga0059261_4033 0.82 -0.3
4,155,263 - Ga0059261_4033 0.82 +0.0
4,155,407 + +0.1
4,155,407 + +0.1
4,155,407 + +0.3
4,155,407 + -0.4
4,155,407 + -0.2
4,155,408 - +0.3
4,155,408 - +0.6
4,155,602 + +1.1
4,155,603 - -0.8
4,155,603 - -1.9

Or see this region's nucleotide sequence