Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1282

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1281 and Ga0059261_1282 are separated by 101 nucleotidesGa0059261_1282 and Ga0059261_1283 are separated by 278 nucleotides Ga0059261_1281: Ga0059261_1281 - histidinol dehydrogenase, at 1,341,360 to 1,342,646 _1281 Ga0059261_1282: Ga0059261_1282 - NusB antitermination factor, at 1,342,748 to 1,343,209 _1282 Ga0059261_1283: Ga0059261_1283 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 1,343,488 to 1,345,221 _1283 Position (kb) 1342 1343 1344Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1341.768 kb on + strand, within Ga0059261_1281at 1341.887 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.907 kb on + strand, within Ga0059261_1281at 1341.908 kb on - strand, within Ga0059261_1281at 1341.908 kb on - strand, within Ga0059261_1281at 1341.908 kb on - strand, within Ga0059261_1281at 1341.948 kb on + strand, within Ga0059261_1281at 1341.949 kb on - strand, within Ga0059261_1281at 1341.949 kb on - strandat 1341.949 kb on - strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.440 kb on + strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.441 kb on - strand, within Ga0059261_1281at 1342.644 kb on + strandat 1342.644 kb on + strandat 1342.644 kb on + strandat 1342.645 kb on - strandat 1342.645 kb on - strandat 1342.669 kb on + strandat 1342.733 kb on + strandat 1343.207 kb on + strandat 1343.207 kb on + strandat 1343.207 kb on + strandat 1343.208 kb on - strandat 1343.418 kb on + strandat 1343.419 kb on - strandat 1343.419 kb on - strandat 1343.429 kb on + strandat 1343.429 kb on + strandat 1343.430 kb on - strandat 1343.451 kb on + strandat 1343.451 kb on + strandat 1343.451 kb on + strandat 1343.452 kb on - strandat 1343.490 kb on - strandat 1343.490 kb on - strandat 1343.490 kb on - strandat 1343.667 kb on - strand, within Ga0059261_1283at 1343.667 kb on - strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.744 kb on + strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.745 kb on - strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.748 kb on + strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.749 kb on - strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strand, within Ga0059261_1283at 1343.750 kb on + strandat 1343.750 kb on + strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strandat 1343.751 kb on - strand, within Ga0059261_1283at 1343.751 kb on - strand, within Ga0059261_1283at 1343.770 kb on + strand, within Ga0059261_1283at 1343.771 kb on - strand, within Ga0059261_1283at 1343.771 kb on - strand, within Ga0059261_1283at 1343.771 kb on - strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strandat 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.879 kb on + strand, within Ga0059261_1283at 1343.880 kb on - strand, within Ga0059261_1283at 1343.880 kb on - strand, within Ga0059261_1283at 1343.880 kb on - strand, within Ga0059261_1283at 1343.880 kb on - strandat 1343.880 kb on - strand, within Ga0059261_1283at 1344.107 kb on + strand, within Ga0059261_1283at 1344.108 kb on - strand, within Ga0059261_1283at 1344.108 kb on - strand, within Ga0059261_1283at 1344.108 kb on - strand, within Ga0059261_1283

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,341,768 + Ga0059261_1281 0.32 -0.7
1,341,887 + Ga0059261_1281 0.41 +0.5
1,341,907 + Ga0059261_1281 0.43 -2.8
1,341,907 + Ga0059261_1281 0.43 -3.3
1,341,907 + Ga0059261_1281 0.43 -1.9
1,341,907 + Ga0059261_1281 0.43 -2.1
1,341,907 + Ga0059261_1281 0.43 -3.2
1,341,907 + Ga0059261_1281 0.43 -0.2
1,341,907 + Ga0059261_1281 0.43 -4.5
1,341,908 - Ga0059261_1281 0.43 -1.9
1,341,908 - Ga0059261_1281 0.43 -1.4
1,341,908 - Ga0059261_1281 0.43 -2.0
1,341,948 + Ga0059261_1281 0.46 -3.8
1,341,949 - Ga0059261_1281 0.46 -3.6
1,341,949 - +0.5
1,341,949 - Ga0059261_1281 0.46 -3.4
1,342,440 + Ga0059261_1281 0.84 -3.3
1,342,440 + Ga0059261_1281 0.84 -4.9
1,342,440 + Ga0059261_1281 0.84 -2.7
1,342,440 + Ga0059261_1281 0.84 -3.1
1,342,440 + Ga0059261_1281 0.84 -3.3
1,342,441 - Ga0059261_1281 0.84 -3.6
1,342,441 - Ga0059261_1281 0.84 -4.2
1,342,441 - Ga0059261_1281 0.84 -2.8
1,342,441 - Ga0059261_1281 0.84 -1.1
1,342,441 - Ga0059261_1281 0.84 -1.6
1,342,644 + -0.2
1,342,644 + +0.7
1,342,644 + -0.1
1,342,645 - +0.2
1,342,645 - +0.4
1,342,669 + +0.1
1,342,733 + -1.4
1,343,207 + -0.4
1,343,207 + -2.1
1,343,207 + -1.1
1,343,208 - +1.8
1,343,418 + +0.2
1,343,419 - -1.8
1,343,419 - +0.1
1,343,429 + +0.9
1,343,429 + -0.7
1,343,430 - -0.5
1,343,451 + -0.4
1,343,451 + -0.2
1,343,451 + +0.7
1,343,452 - -0.6
1,343,490 - -0.2
1,343,490 - -0.3
1,343,490 - -0.6
1,343,667 - Ga0059261_1283 0.10 +0.3
1,343,667 - Ga0059261_1283 0.10 +1.1
1,343,744 + Ga0059261_1283 0.15 +0.2
1,343,744 + Ga0059261_1283 0.15 -0.0
1,343,744 + Ga0059261_1283 0.15 +0.8
1,343,744 + Ga0059261_1283 0.15 +0.6
1,343,744 + Ga0059261_1283 0.15 -0.1
1,343,744 + Ga0059261_1283 0.15 -0.7
1,343,744 + Ga0059261_1283 0.15 -0.2
1,343,744 + Ga0059261_1283 0.15 -0.4
1,343,744 + Ga0059261_1283 0.15 +0.7
1,343,744 + Ga0059261_1283 0.15 -1.0
1,343,744 + Ga0059261_1283 0.15 -0.2
1,343,744 + Ga0059261_1283 0.15 +0.2
1,343,745 - Ga0059261_1283 0.15 -1.3
1,343,745 - Ga0059261_1283 0.15 +0.4
1,343,745 - Ga0059261_1283 0.15 -0.1
1,343,745 - Ga0059261_1283 0.15 -0.6
1,343,745 - Ga0059261_1283 0.15 -0.5
1,343,745 - Ga0059261_1283 0.15 -0.1
1,343,745 - Ga0059261_1283 0.15 -0.1
1,343,745 - Ga0059261_1283 0.15 -0.5
1,343,748 + Ga0059261_1283 0.15 -0.2
1,343,748 + Ga0059261_1283 0.15 -0.1
1,343,748 + Ga0059261_1283 0.15 +0.6
1,343,748 + Ga0059261_1283 0.15 +0.1
1,343,748 + Ga0059261_1283 0.15 -0.0
1,343,749 - Ga0059261_1283 0.15 -0.2
1,343,749 - Ga0059261_1283 0.15 -0.2
1,343,749 - Ga0059261_1283 0.15 +0.0
1,343,749 - Ga0059261_1283 0.15 -1.6
1,343,749 - Ga0059261_1283 0.15 -0.6
1,343,749 - Ga0059261_1283 0.15 -0.0
1,343,750 + Ga0059261_1283 0.15 +0.4
1,343,750 + Ga0059261_1283 0.15 +0.1
1,343,750 + Ga0059261_1283 0.15 -0.4
1,343,750 + Ga0059261_1283 0.15 +0.9
1,343,750 + Ga0059261_1283 0.15 +0.0
1,343,750 + Ga0059261_1283 0.15 -0.1
1,343,750 + Ga0059261_1283 0.15 +0.3
1,343,750 + Ga0059261_1283 0.15 -0.1
1,343,750 + Ga0059261_1283 0.15 -0.5
1,343,750 + Ga0059261_1283 0.15 +0.6
1,343,750 + +0.5
1,343,750 + Ga0059261_1283 0.15 +0.5
1,343,751 - Ga0059261_1283 0.15 -1.8
1,343,751 - Ga0059261_1283 0.15 +0.2
1,343,751 - Ga0059261_1283 0.15 -0.3
1,343,751 - Ga0059261_1283 0.15 +0.3
1,343,751 - +0.6
1,343,751 - Ga0059261_1283 0.15 +0.4
1,343,751 - Ga0059261_1283 0.15 -1.2
1,343,770 + Ga0059261_1283 0.16 +0.6
1,343,771 - Ga0059261_1283 0.16 +0.1
1,343,771 - Ga0059261_1283 0.16 -2.2
1,343,771 - Ga0059261_1283 0.16 -0.7
1,343,879 + Ga0059261_1283 0.23 -0.0
1,343,879 + +0.5
1,343,879 + Ga0059261_1283 0.23 -0.1
1,343,879 + Ga0059261_1283 0.23 -0.1
1,343,879 + Ga0059261_1283 0.23 -0.1
1,343,879 + Ga0059261_1283 0.23 -1.2
1,343,879 + Ga0059261_1283 0.23 -0.1
1,343,880 - Ga0059261_1283 0.23 -0.2
1,343,880 - Ga0059261_1283 0.23 +0.7
1,343,880 - Ga0059261_1283 0.23 +0.7
1,343,880 - +1.1
1,343,880 - Ga0059261_1283 0.23 -0.2
1,344,107 + Ga0059261_1283 0.36 -0.3
1,344,108 - Ga0059261_1283 0.36 -0.5
1,344,108 - Ga0059261_1283 0.36 -0.0
1,344,108 - Ga0059261_1283 0.36 -0.8

Or see this region's nucleotide sequence