Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03685

Experiment: PYE_noCalcium 4C survival rep2 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 4C survival rep2 58 days
3,845,277	+				+0.0
3,845,277	+				-0.3
3,845,297	+				-0.2
3,845,344	+				+1.5
3,845,457	+		CCNA_03684	0.23	+1.6
3,845,463	+		CCNA_03684	0.24	-0.5
3,845,534	+		CCNA_03684	0.35	-0.8
3,845,564	+		CCNA_03684	0.39	+1.4
3,845,571	-				+0.5
3,845,572	+		CCNA_03684	0.40	+0.0
3,845,572	+		CCNA_03684	0.40	+2.3
3,845,572	+		CCNA_03684	0.40	+1.1
3,845,572	+		CCNA_03684	0.40	+0.7
3,845,580	-		CCNA_03684	0.41	-0.2
3,845,580	-		CCNA_03684	0.41	+2.1
3,845,671	+		CCNA_03684	0.55	+1.3
3,845,678	+		CCNA_03684	0.56	-0.5
3,845,679	-		CCNA_03684	0.56	-1.0
3,845,680	-		CCNA_03684	0.56	+1.1
3,845,684	-		CCNA_03684	0.57	-0.7
3,845,688	+		CCNA_03684	0.58	+1.2
3,845,689	-		CCNA_03684	0.58	+0.3
3,845,695	+		CCNA_03684	0.59	+1.4
3,845,696	-		CCNA_03684	0.59	-3.4
3,845,703	-		CCNA_03684	0.60	+2.1
3,845,743	+		CCNA_03684	0.66	+1.3
3,845,744	-		CCNA_03684	0.66	+1.1
3,845,772	-		CCNA_03684	0.70	-2.5
3,845,811	+		CCNA_03684	0.76	+0.5
3,845,815	+		CCNA_03684	0.77	-1.6
3,845,815	+		CCNA_03684	0.77	+0.6
3,845,821	+		CCNA_03684	0.77	+0.1
3,845,843	-		CCNA_03684	0.81	-0.2
3,845,844	-		CCNA_03684	0.81	-0.9
3,845,856	-		CCNA_03684	0.83	-0.7
3,845,897	+		CCNA_03684	0.89	+1.9
3,845,905	-				+0.7
3,845,928	-				+1.5
3,845,942	+				-0.7
3,845,965	+				+0.6
3,845,966	+				-2.4
3,846,008	+				+0.6
3,846,008	+				+0.4
3,846,008	+				+0.8
3,846,008	+				-0.6
3,846,008	+				-0.1
3,846,029	-				-4.0
3,846,029	-				-1.3
3,846,039	-				-0.4
3,846,056	+				-2.4
3,846,056	+				-0.8
3,846,056	+				-0.4
3,846,056	+				+0.9
3,846,064	-				-1.0
3,846,064	-				-0.2
3,846,064	-				-1.1
3,846,064	-				+2.8
3,846,064	-				-0.9
3,846,069	+				+1.9
3,846,081	+				-0.0
3,846,089	-				-0.7
3,846,110	-				-0.3
3,846,144	-				-0.6
3,846,170	-				+1.0
3,846,196	+				+0.4
3,846,196	+				+0.1
3,846,196	+				+1.8
3,846,204	-				+3.7
3,846,204	-				-1.3
3,846,204	-				+0.2
3,846,204	-				-0.1
3,846,204	-				+1.0
3,846,204	-				-2.6
3,846,237	+				-0.4
3,846,237	+				+1.1
3,846,259	-				+0.7
3,846,300	-		CCNA_03685	0.11	+3.1
3,846,341	+		CCNA_03685	0.13	+0.5
3,846,349	-		CCNA_03685	0.14	-0.5
3,846,429	-		CCNA_03685	0.17	+1.1
3,846,457	+		CCNA_03685	0.19	+0.5
3,846,465	-		CCNA_03685	0.19	+0.4
3,846,467	+		CCNA_03685	0.19	+0.8
3,846,467	+		CCNA_03685	0.19	-1.3
3,846,475	-		CCNA_03685	0.20	+0.8
3,846,475	-		CCNA_03685	0.20	-1.3
3,846,475	-		CCNA_03685	0.20	-2.1
3,846,475	-		CCNA_03685	0.20	-2.1
3,846,475	-		CCNA_03685	0.20	-2.5
3,846,475	-		CCNA_03685	0.20	+0.7
3,846,475	-		CCNA_03685	0.20	-2.3
3,846,485	-		CCNA_03685	0.20	-2.0
3,846,523	+		CCNA_03685	0.22	-0.1
3,846,568	+		CCNA_03685	0.24	-0.5
3,846,568	+		CCNA_03685	0.24	-0.9
3,846,576	-		CCNA_03685	0.24	-0.3
3,846,600	-		CCNA_03685	0.25	-2.5
3,846,619	+		CCNA_03685	0.26	-0.8
3,846,619	+		CCNA_03685	0.26	-2.3
3,846,619	+		CCNA_03685	0.26	-3.7
3,846,619	+		CCNA_03685	0.26	-3.8
3,846,625	-		CCNA_03685	0.26	+0.0
3,846,627	-		CCNA_03685	0.26	+1.2
3,846,627	-		CCNA_03685	0.26	+0.5
3,846,627	-				-2.4
3,846,638	+		CCNA_03685	0.27	-2.1
3,846,638	+		CCNA_03685	0.27	+2.1
3,846,646	-		CCNA_03685	0.27	-1.3
3,846,686	+		CCNA_03685	0.29	-3.0
3,846,738	-		CCNA_03685	0.32	-3.0
3,846,787	+		CCNA_03685	0.34	+2.1
3,846,806	+		CCNA_03685	0.35	-0.0
3,846,818	+		CCNA_03685	0.35	-1.1
3,846,848	+		CCNA_03685	0.37	-0.4
3,846,856	-		CCNA_03685	0.37	-0.2
3,846,878	-		CCNA_03685	0.38	+0.1
3,846,899	-		CCNA_03685	0.39	-0.8
3,846,922	+		CCNA_03685	0.40	+0.5
3,846,925	-		CCNA_03685	0.40	-1.3
3,847,022	-		CCNA_03685	0.45	-2.5
3,847,060	+		CCNA_03685	0.46	+0.5
3,847,063	-		CCNA_03685	0.46	-3.2
3,847,074	-		CCNA_03685	0.47	-1.9
3,847,102	+		CCNA_03685	0.48	-2.2
3,847,105	-		CCNA_03685	0.48	-0.1
3,847,110	-		CCNA_03685	0.49	+0.4
3,847,161	-		CCNA_03685	0.51	-0.4
3,847,274	+		CCNA_03685	0.56	+0.6
3,847,274	+		CCNA_03685	0.56	-1.0
3,847,275	-		CCNA_03685	0.56	-1.8
3,847,281	-		CCNA_03685	0.56	-0.5
3,847,291	-		CCNA_03685	0.57	-1.2
3,847,296	-		CCNA_03685	0.57	-0.1
3,847,302	-		CCNA_03685	0.57	-0.4
3,847,341	+		CCNA_03685	0.59	+3.7
3,847,344	-		CCNA_03685	0.59	-0.3
3,847,358	+		CCNA_03685	0.60	-1.9
3,847,366	-		CCNA_03685	0.60	-0.3
3,847,371	-		CCNA_03685	0.61	-0.7
3,847,400	+		CCNA_03685	0.62	-2.6
3,847,415	-		CCNA_03685	0.63	-1.2
3,847,415	-		CCNA_03685	0.63	-2.8
3,847,417	-		CCNA_03685	0.63	-0.1
3,847,417	-		CCNA_03685	0.63	-1.3
3,847,417	-		CCNA_03685	0.63	+0.8
3,847,429	+		CCNA_03685	0.63	-0.1
3,847,429	+		CCNA_03685	0.63	-1.7
3,847,432	-		CCNA_03685	0.63	-0.2
3,847,469	-		CCNA_03685	0.65	+0.5
3,847,473	+		CCNA_03685	0.65	+1.0
3,847,494	-		CCNA_03685	0.66	+0.5
3,847,542	-		CCNA_03685	0.68	-2.6
3,847,563	+		CCNA_03685	0.69	+0.8
3,847,588	+		CCNA_03685	0.70	-1.0
3,847,624	-		CCNA_03685	0.72	-1.9
3,847,627	+		CCNA_03685	0.72	-2.2
3,847,650	+		CCNA_03685	0.73	-0.3
3,847,670	+		CCNA_03685	0.74	-0.4
3,847,678	-		CCNA_03685	0.75	-0.9
3,847,689	+		CCNA_03685	0.75	-2.1
3,847,689	+		CCNA_03685	0.75	-0.6
3,847,695	+		CCNA_03685	0.75	-1.3
3,847,695	+		CCNA_03685	0.75	-0.2
3,847,697	-		CCNA_03685	0.75	+0.1
3,847,697	-		CCNA_03685	0.75	-1.2
3,847,697	-		CCNA_03685	0.75	-0.9
3,847,703	-		CCNA_03685	0.76	+3.9
3,847,703	-		CCNA_03685	0.76	-1.6
3,847,724	-		CCNA_03685	0.77	-0.9
3,847,732	+		CCNA_03685	0.77	-0.8
3,847,741	+		CCNA_03685	0.77	+0.7
3,847,746	+		CCNA_03685	0.78	-0.2
3,847,746	+		CCNA_03685	0.78	-0.7
3,847,747	+		CCNA_03685	0.78	-3.3
3,847,779	-		CCNA_03685	0.79	-1.6
3,847,840	-		CCNA_03685	0.82	-0.8
3,847,861	-		CCNA_03685	0.83	-1.5
3,847,861	-		CCNA_03685	0.83	-0.8
3,847,899	-		CCNA_03685	0.85	-1.1
3,847,937	+		CCNA_03685	0.86	-0.1
3,847,940	-				+2.1
3,847,944	+		CCNA_03685	0.87	-2.4
3,847,960	+		CCNA_03685	0.88	-0.1
3,847,960	+		CCNA_03685	0.88	-0.9
3,847,968	-		CCNA_03685	0.88	-0.9
3,847,968	-		CCNA_03685	0.88	+0.7
3,847,983	+		CCNA_03685	0.89	-1.1
3,848,001	-		CCNA_03685	0.89	-4.4
3,848,021	+				+0.4
3,848,037	-				-1.8
3,848,056	+				-0.2
3,848,064	-				+0.1
3,848,081	-				-1.2
3,848,089	+				-0.2
3,848,089	+				-0.5
3,848,089	+				+0.7
3,848,114	-				+1.0
3,848,137	+				-2.1
3,848,137	+				-1.9
3,848,145	-				+0.9
3,848,162	+				-0.5
3,848,196	+				+0.3
3,848,249	+				+1.4
3,848,251	-				+0.9
3,848,253	+				+0.3
3,848,253	+				-1.1
3,848,261	-				+1.4
3,848,261	-				+1.3
3,848,298	-				+3.7
3,848,308	-				+0.6
3,848,325	+				-0.9
3,848,325	+				-2.0
3,848,325	+				-1.3
3,848,333	-				+1.5
3,848,333	-				+0.1
3,848,333	-				-0.4
3,848,379	+				-1.6
3,848,379	+				-1.4
3,848,379	+				-1.1
3,848,379	+				-0.2
3,848,379	+				-0.2
3,848,387	-				+3.4
3,848,387	-				+0.8
3,848,387	-				-0.4
3,848,392	-				-0.3
3,848,399	-				+0.8
3,848,399	-				+0.7
3,848,405	-				-2.7
3,848,405	-				-0.2
3,848,405	-				-0.3
3,848,409	+				+0.3
3,848,414	+				-1.6
3,848,422	-				+0.3
3,848,422	-				-1.7
3,848,422	-				-0.2
3,848,422	-				+0.7
3,848,422	-				-0.2
3,848,503	-				+2.3
3,848,503	-				+0.6
3,848,503	-				+1.1
3,848,526	-				+0.5
3,848,553	+				+0.3
3,848,574	-				+0.6
3,848,579	+				+0.1
3,848,579	+				+0.1
3,848,584	+				-2.3
3,848,587	-				+0.2
3,848,587	-				+0.3
3,848,587	-				-2.2
3,848,630	-				+1.2
3,848,710	-				-0.8
3,848,712	+				-2.6
3,848,755	-				+0.4
3,848,789	-		CCNA_03686	0.10	+1.0
3,848,874	+		CCNA_03686	0.12	-1.3
3,848,874	+				-0.9
3,848,874	+		CCNA_03686	0.12	+0.3
3,848,882	-		CCNA_03686	0.12	-3.2
3,848,882	-		CCNA_03686	0.12	-0.2
3,848,882	-		CCNA_03686	0.12	+0.6
3,848,882	-		CCNA_03686	0.12	-0.6
3,848,882	-		CCNA_03686	0.12	-0.6
3,848,893	-		CCNA_03686	0.13	+1.0
3,848,897	+		CCNA_03686	0.13	-0.6
3,848,914	+		CCNA_03686	0.13	-2.4
3,848,930	-		CCNA_03686	0.13	-0.2
3,849,037	+		CCNA_03686	0.15	-0.2
3,849,037	+		CCNA_03686	0.15	+0.3
3,849,037	+		CCNA_03686	0.15	-0.4
3,849,037	+		CCNA_03686	0.15	-2.4
3,849,045	-		CCNA_03686	0.16	+0.9
3,849,045	-				-3.0
3,849,050	-		CCNA_03686	0.16	-0.2
3,849,054	-		CCNA_03686	0.16	-2.4
3,849,061	+		CCNA_03686	0.16	-1.1
3,849,069	-		CCNA_03686	0.16	-0.8
3,849,092	+		CCNA_03686	0.16	-0.9
3,849,100	-		CCNA_03686	0.17	+0.7
3,849,131	+		CCNA_03686	0.17	+0.1
3,849,131	+		CCNA_03686	0.17	-0.1
3,849,147	+		CCNA_03686	0.18	-0.5
3,849,147	+		CCNA_03686	0.18	-1.0
3,849,155	-		CCNA_03686	0.18	-3.2
3,849,185	-		CCNA_03686	0.18	-1.3
3,849,206	-		CCNA_03686	0.19	+1.0