Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27135

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27130 and BWI76_RS27135 are separated by 107 nucleotidesBWI76_RS27135 and BWI76_RS27140 overlap by 4 nucleotides BWI76_RS27130: BWI76_RS27130 - hypothetical protein, at 5,629,874 to 5,631,835 _RS27130 BWI76_RS27135: BWI76_RS27135 - selenocysteine-specific translation factor, at 5,631,943 to 5,633,784 _RS27135 BWI76_RS27140: BWI76_RS27140 - L-selenocysteinyl-tRNA(Sec) synthase, at 5,633,781 to 5,635,169 _RS27140 Position (kb) 5631 5632 5633 5634Strain fitness (log2 ratio) -1 0 1 2 3 4at 5630.966 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.976 kb on - strand, within BWI76_RS27130at 5630.976 kb on - strand, within BWI76_RS27130at 5631.084 kb on - strand, within BWI76_RS27130at 5631.137 kb on + strand, within BWI76_RS27130at 5631.170 kb on + strand, within BWI76_RS27130at 5631.177 kb on + strand, within BWI76_RS27130at 5631.177 kb on + strand, within BWI76_RS27130at 5631.185 kb on - strand, within BWI76_RS27130at 5631.291 kb on - strand, within BWI76_RS27130at 5631.311 kb on + strand, within BWI76_RS27130at 5631.312 kb on - strand, within BWI76_RS27130at 5631.461 kb on - strand, within BWI76_RS27130at 5631.515 kb on + strand, within BWI76_RS27130at 5631.596 kb on - strand, within BWI76_RS27130at 5631.805 kb on - strandat 5631.838 kb on - strandat 5631.844 kb on - strandat 5631.863 kb on - strandat 5631.880 kb on + strandat 5631.902 kb on + strandat 5631.976 kb on - strandat 5631.977 kb on - strandat 5631.977 kb on - strandat 5631.977 kb on - strandat 5632.032 kb on - strandat 5632.101 kb on - strandat 5632.182 kb on - strand, within BWI76_RS27135at 5632.198 kb on + strand, within BWI76_RS27135at 5632.206 kb on - strand, within BWI76_RS27135at 5632.206 kb on - strand, within BWI76_RS27135at 5632.259 kb on + strand, within BWI76_RS27135at 5632.363 kb on + strandat 5632.363 kb on + strandat 5632.610 kb on + strand, within BWI76_RS27135at 5632.634 kb on + strand, within BWI76_RS27135at 5632.686 kb on + strand, within BWI76_RS27135at 5632.888 kb on - strand, within BWI76_RS27135at 5632.994 kb on - strand, within BWI76_RS27135at 5633.113 kb on - strand, within BWI76_RS27135at 5633.251 kb on + strand, within BWI76_RS27135at 5633.276 kb on + strand, within BWI76_RS27135at 5633.278 kb on - strand, within BWI76_RS27135at 5633.325 kb on + strand, within BWI76_RS27135at 5633.326 kb on + strand, within BWI76_RS27135at 5633.356 kb on - strand, within BWI76_RS27135at 5633.380 kb on - strand, within BWI76_RS27135at 5633.401 kb on - strand, within BWI76_RS27135at 5633.414 kb on + strand, within BWI76_RS27135at 5633.657 kb on + strandat 5633.824 kb on - strandat 5633.829 kb on - strandat 5633.831 kb on + strandat 5633.834 kb on - strandat 5633.834 kb on - strandat 5633.836 kb on + strandat 5633.890 kb on - strandat 5633.936 kb on + strand, within BWI76_RS27140at 5633.943 kb on + strand, within BWI76_RS27140at 5633.946 kb on - strand, within BWI76_RS27140at 5634.120 kb on - strand, within BWI76_RS27140at 5634.163 kb on + strand, within BWI76_RS27140at 5634.274 kb on - strand, within BWI76_RS27140at 5634.360 kb on + strand, within BWI76_RS27140at 5634.490 kb on - strand, within BWI76_RS27140at 5634.586 kb on + strand, within BWI76_RS27140

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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5,630,966 + BWI76_RS27130 0.56 -0.4
5,630,968 + BWI76_RS27130 0.56 +0.7
5,630,968 + BWI76_RS27130 0.56 -0.1
5,630,968 + BWI76_RS27130 0.56 -0.8
5,630,968 + BWI76_RS27130 0.56 +0.3
5,630,976 - BWI76_RS27130 0.56 -1.2
5,630,976 - BWI76_RS27130 0.56 +0.7
5,631,084 - BWI76_RS27130 0.62 +0.7
5,631,137 + BWI76_RS27130 0.64 -1.4
5,631,170 + BWI76_RS27130 0.66 -0.2
5,631,177 + BWI76_RS27130 0.66 +1.3
5,631,177 + BWI76_RS27130 0.66 -0.0
5,631,185 - BWI76_RS27130 0.67 -0.4
5,631,291 - BWI76_RS27130 0.72 +0.9
5,631,311 + BWI76_RS27130 0.73 -0.7
5,631,312 - BWI76_RS27130 0.73 -1.0
5,631,461 - BWI76_RS27130 0.81 +0.2
5,631,515 + BWI76_RS27130 0.84 -0.7
5,631,596 - BWI76_RS27130 0.88 +0.0
5,631,805 - +0.7
5,631,838 - +0.6
5,631,844 - -1.3
5,631,863 - -0.7
5,631,880 + -1.0
5,631,902 + +0.3
5,631,976 - -0.3
5,631,977 - +0.5
5,631,977 - +0.4
5,631,977 - +4.0
5,632,032 - +1.9
5,632,101 - +1.2
5,632,182 - BWI76_RS27135 0.13 +0.7
5,632,198 + BWI76_RS27135 0.14 +2.7
5,632,206 - BWI76_RS27135 0.14 +0.5
5,632,206 - BWI76_RS27135 0.14 +1.8
5,632,259 + BWI76_RS27135 0.17 +1.7
5,632,363 + +0.7
5,632,363 + +1.5
5,632,610 + BWI76_RS27135 0.36 +0.6
5,632,634 + BWI76_RS27135 0.38 +0.3
5,632,686 + BWI76_RS27135 0.40 +1.2
5,632,888 - BWI76_RS27135 0.51 +1.4
5,632,994 - BWI76_RS27135 0.57 +1.9
5,633,113 - BWI76_RS27135 0.64 +0.7
5,633,251 + BWI76_RS27135 0.71 +0.5
5,633,276 + BWI76_RS27135 0.72 -0.7
5,633,278 - BWI76_RS27135 0.72 +1.1
5,633,325 + BWI76_RS27135 0.75 +0.9
5,633,326 + BWI76_RS27135 0.75 +1.0
5,633,356 - BWI76_RS27135 0.77 +0.9
5,633,380 - BWI76_RS27135 0.78 +1.5
5,633,401 - BWI76_RS27135 0.79 +0.5
5,633,414 + BWI76_RS27135 0.80 +0.3
5,633,657 + +0.7
5,633,824 - +1.4
5,633,829 - -1.3
5,633,831 + +1.2
5,633,834 - +1.1
5,633,834 - +0.9
5,633,836 + +0.8
5,633,890 - -0.7
5,633,936 + BWI76_RS27140 0.11 +1.7
5,633,943 + BWI76_RS27140 0.12 +0.8
5,633,946 - BWI76_RS27140 0.12 +1.6
5,634,120 - BWI76_RS27140 0.24 +3.7
5,634,163 + BWI76_RS27140 0.28 +1.1
5,634,274 - BWI76_RS27140 0.35 +0.9
5,634,360 + BWI76_RS27140 0.42 +3.6
5,634,490 - BWI76_RS27140 0.51 +0.8
5,634,586 + BWI76_RS27140 0.58 +0.2

Or see this region's nucleotide sequence