Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26930 and BWI76_RS26935 are separated by 167 nucleotides BWI76_RS26935 and BWI76_RS26940 are separated by 93 nucleotides BWI76_RS26940 and BWI76_RS26945 are separated by 108 nucleotides BWI76_RS26945 and BWI76_RS26950 are separated by 3 nucleotides
BWI76_RS26930: BWI76_RS26930 - biotin sulfoxide reductase, at 5,585,308 to 5,587,638
_RS26930
BWI76_RS26935: BWI76_RS26935 - OmpA family lipoprotein, at 5,587,806 to 5,588,468
_RS26935
BWI76_RS26940: BWI76_RS26940 - transcriptional regulator, at 5,588,562 to 5,589,578
_RS26940
BWI76_RS26945: BWI76_RS26945 - hypothetical protein, at 5,589,687 to 5,590,436
_RS26945
BWI76_RS26950: BWI76_RS26950 - 2-dehydro-3-deoxygluconokinase, at 5,590,440 to 5,591,378
_RS26950
Position (kb) 5588
5589
5590 Strain fitness (log2 ratio) -2
-1
0
1 at 5587.643 kb on + strand at 5587.669 kb on + strand at 5587.877 kb on + strand, within BWI76_RS26935 at 5587.877 kb on + strand, within BWI76_RS26935 at 5587.877 kb on + strand, within BWI76_RS26935 at 5587.885 kb on - strand, within BWI76_RS26935 at 5587.885 kb on - strand, within BWI76_RS26935 at 5587.947 kb on + strand, within BWI76_RS26935 at 5587.948 kb on + strand, within BWI76_RS26935 at 5587.956 kb on - strand, within BWI76_RS26935 at 5587.956 kb on - strand, within BWI76_RS26935 at 5588.049 kb on - strand, within BWI76_RS26935 at 5588.067 kb on - strand, within BWI76_RS26935 at 5588.196 kb on - strand, within BWI76_RS26935 at 5588.280 kb on + strand, within BWI76_RS26935 at 5588.419 kb on + strand at 5588.424 kb on + strand at 5588.503 kb on + strand at 5588.564 kb on + strand at 5588.737 kb on + strand, within BWI76_RS26940 at 5588.845 kb on + strand, within BWI76_RS26940 at 5588.882 kb on + strand, within BWI76_RS26940 at 5588.897 kb on - strand, within BWI76_RS26940 at 5588.925 kb on - strand, within BWI76_RS26940 at 5589.053 kb on + strand, within BWI76_RS26940 at 5589.152 kb on - strand, within BWI76_RS26940 at 5589.172 kb on + strand, within BWI76_RS26940 at 5589.176 kb on + strand, within BWI76_RS26940 at 5589.186 kb on + strand, within BWI76_RS26940 at 5589.194 kb on - strand, within BWI76_RS26940 at 5589.194 kb on - strand, within BWI76_RS26940 at 5589.236 kb on - strand, within BWI76_RS26940 at 5589.410 kb on - strand, within BWI76_RS26940 at 5589.442 kb on + strand, within BWI76_RS26940 at 5589.450 kb on - strand, within BWI76_RS26940 at 5589.611 kb on + strand at 5589.687 kb on - strand at 5589.757 kb on + strand at 5589.821 kb on - strand, within BWI76_RS26945 at 5589.978 kb on - strand, within BWI76_RS26945 at 5590.209 kb on - strand, within BWI76_RS26945 at 5590.250 kb on + strand, within BWI76_RS26945 at 5590.263 kb on + strand, within BWI76_RS26945 at 5590.403 kb on - strand at 5590.562 kb on - strand, within BWI76_RS26950 at 5590.577 kb on + strand, within BWI76_RS26950
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 5,587,643 + -0.7 5,587,669 + -0.0 5,587,877 + BWI76_RS26935 0.11 -0.9 5,587,877 + BWI76_RS26935 0.11 -1.2 5,587,877 + BWI76_RS26935 0.11 +0.1 5,587,885 - BWI76_RS26935 0.12 +0.6 5,587,885 - BWI76_RS26935 0.12 -0.8 5,587,947 + BWI76_RS26935 0.21 -0.1 5,587,948 + BWI76_RS26935 0.21 -1.3 5,587,956 - BWI76_RS26935 0.23 -1.9 5,587,956 - BWI76_RS26935 0.23 +0.4 5,588,049 - BWI76_RS26935 0.37 +0.2 5,588,067 - BWI76_RS26935 0.39 -1.6 5,588,196 - BWI76_RS26935 0.59 -0.3 5,588,280 + BWI76_RS26935 0.71 +0.4 5,588,419 + +0.2 5,588,424 + -1.6 5,588,503 + -0.6 5,588,564 + -1.2 5,588,737 + BWI76_RS26940 0.17 -1.5 5,588,845 + BWI76_RS26940 0.28 -2.1 5,588,882 + BWI76_RS26940 0.31 -0.9 5,588,897 - BWI76_RS26940 0.33 +1.1 5,588,925 - BWI76_RS26940 0.36 -0.9 5,589,053 + BWI76_RS26940 0.48 -0.6 5,589,152 - BWI76_RS26940 0.58 +0.1 5,589,172 + BWI76_RS26940 0.60 -2.7 5,589,176 + BWI76_RS26940 0.60 -0.9 5,589,186 + BWI76_RS26940 0.61 -1.0 5,589,194 - BWI76_RS26940 0.62 -0.9 5,589,194 - BWI76_RS26940 0.62 -1.2 5,589,236 - BWI76_RS26940 0.66 -1.2 5,589,410 - BWI76_RS26940 0.83 -2.3 5,589,442 + BWI76_RS26940 0.87 +0.5 5,589,450 - BWI76_RS26940 0.87 -1.6 5,589,611 + -1.0 5,589,687 - -0.6 5,589,757 + -1.1 5,589,821 - BWI76_RS26945 0.18 -1.6 5,589,978 - BWI76_RS26945 0.39 +0.4 5,590,209 - BWI76_RS26945 0.70 -0.9 5,590,250 + BWI76_RS26945 0.75 -0.7 5,590,263 + BWI76_RS26945 0.77 -0.2 5,590,403 - -0.1 5,590,562 - BWI76_RS26950 0.13 -1.0 5,590,577 + BWI76_RS26950 0.15 +0.0
Or see this region's nucleotide sequence