Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23370

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23365 and BWI76_RS23370 overlap by 14 nucleotidesBWI76_RS23370 and BWI76_RS23375 are separated by 135 nucleotidesBWI76_RS23375 and BWI76_RS23380 are separated by 493 nucleotides BWI76_RS23365: BWI76_RS23365 - LysR family transcriptional regulator, at 4,872,737 to 4,873,663 _RS23365 BWI76_RS23370: BWI76_RS23370 - aspartate/glutamate racemase, at 4,873,650 to 4,874,342 _RS23370 BWI76_RS23375: BWI76_RS23375 - cupin, at 4,874,478 to 4,874,804 _RS23375 BWI76_RS23380: BWI76_RS23380 - sugar ABC transporter permease, at 4,875,298 to 4,876,188 _RS23380 Position (kb) 4873 4874 4875Strain fitness (log2 ratio) -2 -1 0 1 2at 4873.349 kb on - strand, within BWI76_RS23365at 4873.500 kb on + strandat 4873.500 kb on + strand, within BWI76_RS23365at 4873.508 kb on - strand, within BWI76_RS23365at 4873.534 kb on - strand, within BWI76_RS23365at 4873.604 kb on + strandat 4873.648 kb on + strandat 4873.802 kb on + strand, within BWI76_RS23370at 4873.810 kb on - strand, within BWI76_RS23370at 4873.822 kb on - strand, within BWI76_RS23370at 4873.823 kb on + strand, within BWI76_RS23370at 4873.920 kb on + strand, within BWI76_RS23370at 4873.997 kb on - strand, within BWI76_RS23370at 4874.110 kb on - strand, within BWI76_RS23370at 4874.134 kb on - strand, within BWI76_RS23370at 4874.156 kb on - strand, within BWI76_RS23370at 4874.311 kb on - strandat 4874.519 kb on - strand, within BWI76_RS23375at 4874.519 kb on - strand, within BWI76_RS23375at 4874.578 kb on + strand, within BWI76_RS23375at 4874.627 kb on + strand, within BWI76_RS23375at 4874.627 kb on + strand, within BWI76_RS23375at 4874.632 kb on + strand, within BWI76_RS23375at 4874.632 kb on + strand, within BWI76_RS23375at 4874.640 kb on - strand, within BWI76_RS23375at 4874.821 kb on - strandat 4874.821 kb on - strandat 4874.941 kb on + strandat 4874.950 kb on - strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.961 kb on + strandat 4874.969 kb on - strandat 4874.969 kb on - strandat 4874.969 kb on - strandat 4875.256 kb on + strandat 4875.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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4,873,349 - BWI76_RS23365 0.66 +0.4
4,873,500 + +0.9
4,873,500 + BWI76_RS23365 0.82 -0.7
4,873,508 - BWI76_RS23365 0.83 -1.2
4,873,534 - BWI76_RS23365 0.86 -0.2
4,873,604 + -0.9
4,873,648 + -1.9
4,873,802 + BWI76_RS23370 0.22 -0.0
4,873,810 - BWI76_RS23370 0.23 -0.7
4,873,822 - BWI76_RS23370 0.25 -0.8
4,873,823 + BWI76_RS23370 0.25 -0.3
4,873,920 + BWI76_RS23370 0.39 +0.2
4,873,997 - BWI76_RS23370 0.50 -1.5
4,874,110 - BWI76_RS23370 0.66 -0.2
4,874,134 - BWI76_RS23370 0.70 +1.9
4,874,156 - BWI76_RS23370 0.73 -0.1
4,874,311 - -0.1
4,874,519 - BWI76_RS23375 0.13 -0.7
4,874,519 - BWI76_RS23375 0.13 -0.0
4,874,578 + BWI76_RS23375 0.31 +0.1
4,874,627 + BWI76_RS23375 0.46 -1.6
4,874,627 + BWI76_RS23375 0.46 -0.9
4,874,632 + BWI76_RS23375 0.47 +1.5
4,874,632 + BWI76_RS23375 0.47 -0.9
4,874,640 - BWI76_RS23375 0.50 +0.1
4,874,821 - -0.5
4,874,821 - -0.2
4,874,941 + +0.6
4,874,950 - +0.6
4,874,961 + +0.8
4,874,961 + +2.2
4,874,961 + +1.3
4,874,969 - +1.2
4,874,969 - +0.5
4,874,969 - -1.2
4,875,256 + -1.4
4,875,287 + -0.7

Or see this region's nucleotide sequence