Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22250

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22240 and BWI76_RS22245 overlap by 8 nucleotidesBWI76_RS22245 and BWI76_RS22250 overlap by 38 nucleotidesBWI76_RS22250 and BWI76_RS22255 overlap by 1 nucleotidesBWI76_RS22255 and BWI76_RS22260 are separated by 95 nucleotides BWI76_RS22240: BWI76_RS22240 - transcriptional regulator, at 4,635,396 to 4,636,169 _RS22240 BWI76_RS22245: BWI76_RS22245 - arabinose 5-phosphate isomerase GutQ, at 4,636,162 to 4,637,127 _RS22245 BWI76_RS22250: BWI76_RS22250 - nitric oxide reductase transcription regulator, at 4,637,090 to 4,638,634 _RS22250 BWI76_RS22255: BWI76_RS22255 - transcriptional regulator, at 4,638,634 to 4,638,726 _RS22255 BWI76_RS22260: BWI76_RS22260 - anaerobic nitric oxide reductase flavorubredoxin, at 4,638,822 to 4,640,267 _RS22260 Position (kb) 4637 4638 4639Strain fitness (log2 ratio) -2 -1 0 1at 4636.176 kb on + strandat 4636.196 kb on + strandat 4636.356 kb on - strand, within BWI76_RS22245at 4636.472 kb on - strand, within BWI76_RS22245at 4636.513 kb on - strand, within BWI76_RS22245at 4636.622 kb on + strand, within BWI76_RS22245at 4636.623 kb on + strand, within BWI76_RS22245at 4636.835 kb on - strand, within BWI76_RS22245at 4636.847 kb on + strand, within BWI76_RS22245at 4637.022 kb on - strand, within BWI76_RS22245at 4637.163 kb on - strandat 4637.358 kb on - strand, within BWI76_RS22250at 4637.886 kb on + strand, within BWI76_RS22250at 4638.004 kb on + strand, within BWI76_RS22250at 4638.077 kb on + strand, within BWI76_RS22250at 4638.102 kb on + strand, within BWI76_RS22250at 4638.119 kb on - strand, within BWI76_RS22250at 4638.169 kb on - strand, within BWI76_RS22250at 4638.216 kb on - strand, within BWI76_RS22250at 4638.235 kb on - strand, within BWI76_RS22250at 4638.260 kb on + strand, within BWI76_RS22250at 4638.458 kb on - strand, within BWI76_RS22250at 4638.543 kb on + strandat 4638.858 kb on + strandat 4638.876 kb on - strandat 4638.900 kb on - strandat 4639.181 kb on - strand, within BWI76_RS22260at 4639.302 kb on + strand, within BWI76_RS22260at 4639.339 kb on - strand, within BWI76_RS22260at 4639.339 kb on - strand, within BWI76_RS22260at 4639.405 kb on - strand, within BWI76_RS22260

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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4,636,176 + +1.2
4,636,196 + -1.2
4,636,356 - BWI76_RS22245 0.20 -0.8
4,636,472 - BWI76_RS22245 0.32 -1.2
4,636,513 - BWI76_RS22245 0.36 -0.6
4,636,622 + BWI76_RS22245 0.48 -0.3
4,636,623 + BWI76_RS22245 0.48 +0.8
4,636,835 - BWI76_RS22245 0.70 -0.5
4,636,847 + BWI76_RS22245 0.71 +0.6
4,637,022 - BWI76_RS22245 0.89 -0.1
4,637,163 - -0.3
4,637,358 - BWI76_RS22250 0.17 -0.2
4,637,886 + BWI76_RS22250 0.52 -0.1
4,638,004 + BWI76_RS22250 0.59 -1.0
4,638,077 + BWI76_RS22250 0.64 -1.9
4,638,102 + BWI76_RS22250 0.66 -2.0
4,638,119 - BWI76_RS22250 0.67 +0.6
4,638,169 - BWI76_RS22250 0.70 -0.6
4,638,216 - BWI76_RS22250 0.73 -2.2
4,638,235 - BWI76_RS22250 0.74 -0.8
4,638,260 + BWI76_RS22250 0.76 -0.8
4,638,458 - BWI76_RS22250 0.89 +0.0
4,638,543 + -0.6
4,638,858 + -1.1
4,638,876 - +0.6
4,638,900 - -0.8
4,639,181 - BWI76_RS22260 0.25 -0.3
4,639,302 + BWI76_RS22260 0.33 +1.2
4,639,339 - BWI76_RS22260 0.36 +0.0
4,639,339 - BWI76_RS22260 0.36 -0.4
4,639,405 - BWI76_RS22260 0.40 +0.5

Or see this region's nucleotide sequence