Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21640 and BWI76_RS21645 are separated by 54 nucleotides BWI76_RS21645 and BWI76_RS21650 are separated by 85 nucleotides BWI76_RS21650 and BWI76_RS21655 are separated by 106 nucleotides BWI76_RS21655 and BWI76_RS21660 are separated by 78 nucleotides BWI76_RS21660 and BWI76_RS21665 are separated by 10 nucleotides BWI76_RS21665 and BWI76_RS21670 overlap by 4 nucleotides
BWI76_RS21640: BWI76_RS21640 - hypothetical protein, at 4,531,999 to 4,532,463
_RS21640
BWI76_RS21645: BWI76_RS21645 - hypothetical protein, at 4,532,518 to 4,532,877
_RS21645
BWI76_RS21650: BWI76_RS21650 - hypothetical protein, at 4,532,963 to 4,533,175
_RS21650
BWI76_RS21655: BWI76_RS21655 - hypothetical protein, at 4,533,282 to 4,534,103
_RS21655
BWI76_RS21660: BWI76_RS21660 - antirestriction protein, at 4,534,182 to 4,534,655
_RS21660
BWI76_RS21665: BWI76_RS21665 - hypothetical protein, at 4,534,666 to 4,534,899
_RS21665
BWI76_RS21670: BWI76_RS21670 - hypothetical protein, at 4,534,896 to 4,535,378
_RS21670
Position (kb)
4533
4534
4535 Strain fitness (log2 ratio)
-2
-1
0
1 at 4532.312 kb on + strand, within BWI76_RS21640 at 4532.330 kb on - strand, within BWI76_RS21640 at 4532.372 kb on + strand, within BWI76_RS21640 at 4532.372 kb on + strand, within BWI76_RS21640 at 4532.372 kb on + strand, within BWI76_RS21640 at 4532.380 kb on - strand, within BWI76_RS21640 at 4532.380 kb on - strand, within BWI76_RS21640 at 4532.405 kb on - strand, within BWI76_RS21640 at 4532.405 kb on - strand, within BWI76_RS21640 at 4532.433 kb on - strand at 4532.465 kb on - strand at 4532.535 kb on + strand at 4532.548 kb on - strand at 4532.557 kb on + strand, within BWI76_RS21645 at 4532.557 kb on + strand, within BWI76_RS21645 at 4532.563 kb on + strand, within BWI76_RS21645 at 4532.571 kb on - strand, within BWI76_RS21645 at 4532.587 kb on - strand, within BWI76_RS21645 at 4532.624 kb on - strand, within BWI76_RS21645 at 4532.626 kb on + strand, within BWI76_RS21645 at 4532.640 kb on + strand, within BWI76_RS21645 at 4532.655 kb on - strand, within BWI76_RS21645 at 4532.659 kb on + strand, within BWI76_RS21645 at 4532.662 kb on + strand, within BWI76_RS21645 at 4532.664 kb on + strand, within BWI76_RS21645 at 4532.664 kb on + strand, within BWI76_RS21645 at 4532.840 kb on + strand, within BWI76_RS21645 at 4532.850 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.859 kb on + strand at 4532.867 kb on - strand at 4532.867 kb on - strand at 4532.867 kb on - strand at 4532.945 kb on - strand at 4532.947 kb on + strand at 4532.947 kb on + strand at 4532.952 kb on + strand at 4532.995 kb on + strand, within BWI76_RS21650 at 4532.998 kb on - strand, within BWI76_RS21650 at 4533.010 kb on - strand, within BWI76_RS21650 at 4533.031 kb on - strand, within BWI76_RS21650 at 4533.090 kb on - strand, within BWI76_RS21650 at 4533.427 kb on + strand, within BWI76_RS21655 at 4533.427 kb on + strand, within BWI76_RS21655 at 4533.427 kb on + strand, within BWI76_RS21655 at 4533.454 kb on - strand, within BWI76_RS21655 at 4533.517 kb on + strand, within BWI76_RS21655 at 4533.523 kb on + strand, within BWI76_RS21655 at 4533.827 kb on + strand, within BWI76_RS21655 at 4533.827 kb on + strand, within BWI76_RS21655 at 4533.835 kb on - strand, within BWI76_RS21655 at 4533.927 kb on - strand, within BWI76_RS21655 at 4533.995 kb on + strand, within BWI76_RS21655 at 4533.995 kb on + strand, within BWI76_RS21655 at 4533.995 kb on + strand, within BWI76_RS21655 at 4534.003 kb on - strand, within BWI76_RS21655 at 4534.003 kb on - strand at 4534.387 kb on - strand, within BWI76_RS21660 at 4534.619 kb on + strand at 4534.882 kb on - strand at 4534.942 kb on + strand at 4534.963 kb on - strand, within BWI76_RS21670
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 4,532,312 + BWI76_RS21640 0.67 +0.5 4,532,330 - BWI76_RS21640 0.71 -1.5 4,532,372 + BWI76_RS21640 0.80 -0.8 4,532,372 + BWI76_RS21640 0.80 -1.5 4,532,372 + BWI76_RS21640 0.80 +0.1 4,532,380 - BWI76_RS21640 0.82 -1.4 4,532,380 - BWI76_RS21640 0.82 +0.3 4,532,405 - BWI76_RS21640 0.87 +0.2 4,532,405 - BWI76_RS21640 0.87 -2.2 4,532,433 - -0.4 4,532,465 - -1.1 4,532,535 + +0.1 4,532,548 - -1.7 4,532,557 + BWI76_RS21645 0.11 -0.2 4,532,557 + BWI76_RS21645 0.11 -0.8 4,532,563 + BWI76_RS21645 0.12 -0.7 4,532,571 - BWI76_RS21645 0.15 +0.2 4,532,587 - BWI76_RS21645 0.19 -0.3 4,532,624 - BWI76_RS21645 0.29 -1.2 4,532,626 + BWI76_RS21645 0.30 +0.4 4,532,640 + BWI76_RS21645 0.34 -0.4 4,532,655 - BWI76_RS21645 0.38 -0.9 4,532,659 + BWI76_RS21645 0.39 +0.1 4,532,662 + BWI76_RS21645 0.40 -0.3 4,532,664 + BWI76_RS21645 0.41 +0.5 4,532,664 + BWI76_RS21645 0.41 +1.2 4,532,840 + BWI76_RS21645 0.89 -1.7 4,532,850 + -0.5 4,532,859 + +0.1 4,532,859 + +0.2 4,532,859 + -0.8 4,532,859 + +0.1 4,532,859 + -0.2 4,532,859 + -1.1 4,532,859 + +0.1 4,532,859 + -1.2 4,532,867 - +0.1 4,532,867 - -0.1 4,532,867 - +0.3 4,532,945 - -0.2 4,532,947 + +0.0 4,532,947 + +0.6 4,532,952 + +0.6 4,532,995 + BWI76_RS21650 0.15 -0.1 4,532,998 - BWI76_RS21650 0.16 +0.0 4,533,010 - BWI76_RS21650 0.22 -0.3 4,533,031 - BWI76_RS21650 0.32 +0.3 4,533,090 - BWI76_RS21650 0.60 +0.1 4,533,427 + BWI76_RS21655 0.18 -0.4 4,533,427 + BWI76_RS21655 0.18 +0.7 4,533,427 + BWI76_RS21655 0.18 +0.7 4,533,454 - BWI76_RS21655 0.21 -0.2 4,533,517 + BWI76_RS21655 0.29 -0.5 4,533,523 + BWI76_RS21655 0.29 +0.3 4,533,827 + BWI76_RS21655 0.66 +0.5 4,533,827 + BWI76_RS21655 0.66 +0.8 4,533,835 - BWI76_RS21655 0.67 +0.2 4,533,927 - BWI76_RS21655 0.78 +0.8 4,533,995 + BWI76_RS21655 0.87 +0.7 4,533,995 + BWI76_RS21655 0.87 -0.2 4,533,995 + BWI76_RS21655 0.87 -0.8 4,534,003 - BWI76_RS21655 0.88 +1.7 4,534,003 - +0.9 4,534,387 - BWI76_RS21660 0.43 -0.1 4,534,619 + +0.6 4,534,882 - +0.0 4,534,942 + +0.4 4,534,963 - BWI76_RS21670 0.14 -0.3
Or see this region's nucleotide sequence