Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18410 and BWI76_RS18415 overlap by 26 nucleotides BWI76_RS18415 and BWI76_RS18420 overlap by 20 nucleotides BWI76_RS18420 and BWI76_RS18425 are separated by 17 nucleotides BWI76_RS18425 and BWI76_RS18430 are separated by 42 nucleotides
BWI76_RS18410: BWI76_RS18410 - drug/metabolite exporter YedA, at 3,820,405 to 3,821,316
_RS18410
BWI76_RS18415: BWI76_RS18415 - very short patch repair endonuclease, at 3,821,291 to 3,821,785
_RS18415
BWI76_RS18420: BWI76_RS18420 - DNA (cytosine-5-)-methyltransferase, at 3,821,766 to 3,823,238
_RS18420
BWI76_RS18425: BWI76_RS18425 - phosphohydrolase, at 3,823,256 to 3,823,951
_RS18425
BWI76_RS18430: BWI76_RS18430 - hypothetical protein, at 3,823,994 to 3,824,275
_RS18430
Position (kb)
3821
3822
3823
3824 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3820.848 kb on + strand, within BWI76_RS18410 at 3820.848 kb on + strand, within BWI76_RS18410 at 3820.848 kb on + strand, within BWI76_RS18410 at 3820.848 kb on + strand, within BWI76_RS18410 at 3821.203 kb on + strand, within BWI76_RS18410 at 3821.326 kb on + strand at 3821.438 kb on + strand, within BWI76_RS18415 at 3821.517 kb on + strand, within BWI76_RS18415 at 3821.895 kb on + strand at 3822.162 kb on + strand, within BWI76_RS18420 at 3822.213 kb on - strand, within BWI76_RS18420 at 3822.238 kb on + strand, within BWI76_RS18420 at 3822.273 kb on + strand, within BWI76_RS18420 at 3822.299 kb on + strand, within BWI76_RS18420 at 3822.317 kb on + strand, within BWI76_RS18420 at 3822.344 kb on + strand, within BWI76_RS18420 at 3822.431 kb on + strand, within BWI76_RS18420 at 3822.439 kb on - strand, within BWI76_RS18420 at 3822.713 kb on - strand, within BWI76_RS18420 at 3822.788 kb on - strand, within BWI76_RS18420 at 3823.001 kb on + strand, within BWI76_RS18420 at 3823.266 kb on + strand at 3823.267 kb on + strand at 3823.274 kb on - strand at 3823.323 kb on + strand at 3823.335 kb on + strand, within BWI76_RS18425 at 3823.343 kb on - strand, within BWI76_RS18425 at 3823.835 kb on + strand, within BWI76_RS18425 at 3823.972 kb on - strand at 3823.979 kb on - strand at 3823.994 kb on - strand at 3824.162 kb on - strand, within BWI76_RS18430 at 3824.173 kb on + strand, within BWI76_RS18430 at 3824.181 kb on - strand, within BWI76_RS18430 at 3824.196 kb on - strand, within BWI76_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 3,820,848 + BWI76_RS18410 0.49 -0.9 3,820,848 + BWI76_RS18410 0.49 -1.1 3,820,848 + BWI76_RS18410 0.49 +0.0 3,820,848 + BWI76_RS18410 0.49 +0.6 3,821,203 + BWI76_RS18410 0.88 +0.5 3,821,326 + -0.6 3,821,438 + BWI76_RS18415 0.30 +0.3 3,821,517 + BWI76_RS18415 0.46 -0.1 3,821,895 + +3.7 3,822,162 + BWI76_RS18420 0.27 +3.5 3,822,213 - BWI76_RS18420 0.30 +3.2 3,822,238 + BWI76_RS18420 0.32 +2.0 3,822,273 + BWI76_RS18420 0.34 +4.0 3,822,299 + BWI76_RS18420 0.36 +3.8 3,822,317 + BWI76_RS18420 0.37 +3.2 3,822,344 + BWI76_RS18420 0.39 +3.4 3,822,431 + BWI76_RS18420 0.45 +3.2 3,822,439 - BWI76_RS18420 0.46 +1.6 3,822,713 - BWI76_RS18420 0.64 +3.5 3,822,788 - BWI76_RS18420 0.69 +3.0 3,823,001 + BWI76_RS18420 0.84 +3.4 3,823,266 + -0.5 3,823,267 + -1.9 3,823,274 - -0.2 3,823,323 + +0.1 3,823,335 + BWI76_RS18425 0.11 -0.7 3,823,343 - BWI76_RS18425 0.12 +0.9 3,823,835 + BWI76_RS18425 0.83 +0.7 3,823,972 - +0.6 3,823,979 - -1.6 3,823,994 - -1.2 3,824,162 - BWI76_RS18430 0.60 -0.1 3,824,173 + BWI76_RS18430 0.63 -0.0 3,824,181 - BWI76_RS18430 0.66 -3.9 3,824,196 - BWI76_RS18430 0.72 -0.4
Or see this region's nucleotide sequence