Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17990 and BWI76_RS17995 overlap by 32 nucleotides BWI76_RS17995 and BWI76_RS18000 are separated by 36 nucleotides
BWI76_RS17990: BWI76_RS17990 - paraquat-inducible membrane protein A, at 3,737,520 to 3,738,803
_RS17990
BWI76_RS17995: BWI76_RS17995 - hypothetical protein, at 3,738,772 to 3,741,405
_RS17995
BWI76_RS18000: BWI76_RS18000 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 3,741,442 to 3,742,917
_RS18000
Position (kb)
3738
3739
3740
3741
3742 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3737.834 kb on - strand, within BWI76_RS17990 at 3737.858 kb on - strand, within BWI76_RS17990 at 3737.986 kb on - strand, within BWI76_RS17990 at 3738.077 kb on + strand, within BWI76_RS17990 at 3738.167 kb on + strand, within BWI76_RS17990 at 3738.563 kb on - strand, within BWI76_RS17990 at 3739.085 kb on - strand, within BWI76_RS17995 at 3739.193 kb on - strand, within BWI76_RS17995 at 3739.349 kb on + strand, within BWI76_RS17995 at 3739.357 kb on - strand, within BWI76_RS17995 at 3739.482 kb on + strand, within BWI76_RS17995 at 3739.666 kb on - strand, within BWI76_RS17995 at 3739.858 kb on + strand, within BWI76_RS17995 at 3739.867 kb on - strand, within BWI76_RS17995 at 3739.867 kb on - strand, within BWI76_RS17995 at 3740.264 kb on + strand, within BWI76_RS17995 at 3740.340 kb on - strand, within BWI76_RS17995 at 3740.719 kb on + strand, within BWI76_RS17995 at 3740.760 kb on - strand, within BWI76_RS17995 at 3740.816 kb on + strand at 3740.954 kb on - strand, within BWI76_RS17995 at 3741.265 kb on - strand at 3741.700 kb on - strand, within BWI76_RS18000 at 3742.331 kb on - strand, within BWI76_RS18000 at 3742.387 kb on + strand, within BWI76_RS18000
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 3,737,834 - BWI76_RS17990 0.24 -0.0 3,737,858 - BWI76_RS17990 0.26 -0.7 3,737,986 - BWI76_RS17990 0.36 -1.6 3,738,077 + BWI76_RS17990 0.43 -0.2 3,738,167 + BWI76_RS17990 0.50 -0.8 3,738,563 - BWI76_RS17990 0.81 -0.2 3,739,085 - BWI76_RS17995 0.12 -1.5 3,739,193 - BWI76_RS17995 0.16 +2.8 3,739,349 + BWI76_RS17995 0.22 -0.3 3,739,357 - BWI76_RS17995 0.22 -1.5 3,739,482 + BWI76_RS17995 0.27 -0.2 3,739,666 - BWI76_RS17995 0.34 -0.1 3,739,858 + BWI76_RS17995 0.41 -0.0 3,739,867 - BWI76_RS17995 0.42 -1.1 3,739,867 - BWI76_RS17995 0.42 +0.8 3,740,264 + BWI76_RS17995 0.57 -1.9 3,740,340 - BWI76_RS17995 0.60 -1.4 3,740,719 + BWI76_RS17995 0.74 -0.1 3,740,760 - BWI76_RS17995 0.75 +0.6 3,740,816 + -0.2 3,740,954 - BWI76_RS17995 0.83 -0.2 3,741,265 - +0.4 3,741,700 - BWI76_RS18000 0.17 -2.9 3,742,331 - BWI76_RS18000 0.60 -0.6 3,742,387 + BWI76_RS18000 0.64 +0.5
Or see this region's nucleotide sequence