Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13675

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13670 and BWI76_RS13675 are separated by 189 nucleotidesBWI76_RS13675 and BWI76_RS13680 are separated by 119 nucleotides BWI76_RS13670: BWI76_RS13670 - NarK family nitrate/nitrite MFS transporter, at 2,852,208 to 2,853,596 _RS13670 BWI76_RS13675: BWI76_RS13675 - TetR family transcriptional regulator, at 2,853,786 to 2,854,361 _RS13675 BWI76_RS13680: BWI76_RS13680 - methyl viologen resistance protein SmvA, at 2,854,481 to 2,855,971 _RS13680 Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 2852.887 kb on - strand, within BWI76_RS13670at 2852.909 kb on + strand, within BWI76_RS13670at 2853.073 kb on - strand, within BWI76_RS13670at 2853.099 kb on + strand, within BWI76_RS13670at 2853.099 kb on + strand, within BWI76_RS13670at 2853.099 kb on + strand, within BWI76_RS13670at 2853.104 kb on + strand, within BWI76_RS13670at 2853.106 kb on + strand, within BWI76_RS13670at 2853.107 kb on - strand, within BWI76_RS13670at 2853.194 kb on - strand, within BWI76_RS13670at 2853.194 kb on - strand, within BWI76_RS13670at 2853.228 kb on + strand, within BWI76_RS13670at 2853.231 kb on + strand, within BWI76_RS13670at 2853.231 kb on + strand, within BWI76_RS13670at 2853.231 kb on + strand, within BWI76_RS13670at 2853.233 kb on + strand, within BWI76_RS13670at 2853.233 kb on + strand, within BWI76_RS13670at 2853.233 kb on + strand, within BWI76_RS13670at 2853.239 kb on - strand, within BWI76_RS13670at 2853.239 kb on - strand, within BWI76_RS13670at 2853.239 kb on - strand, within BWI76_RS13670at 2853.239 kb on - strand, within BWI76_RS13670at 2853.239 kb on - strand, within BWI76_RS13670at 2853.239 kb on - strand, within BWI76_RS13670at 2853.241 kb on + strand, within BWI76_RS13670at 2853.241 kb on - strand, within BWI76_RS13670at 2853.241 kb on - strand, within BWI76_RS13670at 2853.241 kb on - strand, within BWI76_RS13670at 2853.241 kb on - strand, within BWI76_RS13670at 2853.246 kb on - strand, within BWI76_RS13670at 2853.252 kb on + strand, within BWI76_RS13670at 2853.255 kb on + strand, within BWI76_RS13670at 2853.256 kb on - strand, within BWI76_RS13670at 2853.260 kb on - strand, within BWI76_RS13670at 2853.261 kb on - strand, within BWI76_RS13670at 2853.289 kb on + strand, within BWI76_RS13670at 2853.292 kb on - strand, within BWI76_RS13670at 2853.317 kb on + strand, within BWI76_RS13670at 2853.332 kb on - strand, within BWI76_RS13670at 2853.344 kb on - strand, within BWI76_RS13670at 2853.441 kb on - strand, within BWI76_RS13670at 2853.601 kb on - strandat 2853.623 kb on - strandat 2853.689 kb on - strandat 2853.693 kb on + strandat 2853.701 kb on - strandat 2853.774 kb on + strandat 2853.781 kb on - strandat 2853.782 kb on - strandat 2853.782 kb on - strandat 2853.880 kb on + strand, within BWI76_RS13675at 2853.888 kb on - strand, within BWI76_RS13675at 2853.888 kb on - strand, within BWI76_RS13675at 2853.931 kb on + strand, within BWI76_RS13675at 2853.939 kb on - strand, within BWI76_RS13675at 2853.955 kb on - strand, within BWI76_RS13675at 2853.988 kb on - strand, within BWI76_RS13675at 2853.996 kb on - strand, within BWI76_RS13675at 2854.015 kb on + strand, within BWI76_RS13675at 2854.015 kb on + strand, within BWI76_RS13675at 2854.015 kb on + strand, within BWI76_RS13675at 2854.023 kb on - strand, within BWI76_RS13675at 2854.023 kb on - strand, within BWI76_RS13675at 2854.023 kb on - strand, within BWI76_RS13675at 2854.193 kb on - strand, within BWI76_RS13675at 2854.219 kb on + strand, within BWI76_RS13675at 2854.221 kb on - strand, within BWI76_RS13675at 2854.483 kb on - strandat 2854.580 kb on - strandat 2854.586 kb on - strandat 2854.713 kb on - strand, within BWI76_RS13680at 2855.146 kb on + strand, within BWI76_RS13680at 2855.196 kb on - strand, within BWI76_RS13680at 2855.310 kb on + strand, within BWI76_RS13680

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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2,852,887 - BWI76_RS13670 0.49 +0.1
2,852,909 + BWI76_RS13670 0.50 +0.0
2,853,073 - BWI76_RS13670 0.62 -1.3
2,853,099 + BWI76_RS13670 0.64 -1.0
2,853,099 + BWI76_RS13670 0.64 +2.0
2,853,099 + BWI76_RS13670 0.64 -0.5
2,853,104 + BWI76_RS13670 0.65 +1.6
2,853,106 + BWI76_RS13670 0.65 -0.3
2,853,107 - BWI76_RS13670 0.65 +0.5
2,853,194 - BWI76_RS13670 0.71 -0.4
2,853,194 - BWI76_RS13670 0.71 -0.8
2,853,228 + BWI76_RS13670 0.73 +1.0
2,853,231 + BWI76_RS13670 0.74 +0.2
2,853,231 + BWI76_RS13670 0.74 +0.0
2,853,231 + BWI76_RS13670 0.74 -1.2
2,853,233 + BWI76_RS13670 0.74 -1.0
2,853,233 + BWI76_RS13670 0.74 +1.8
2,853,233 + BWI76_RS13670 0.74 -0.4
2,853,239 - BWI76_RS13670 0.74 -0.2
2,853,239 - BWI76_RS13670 0.74 -0.8
2,853,239 - BWI76_RS13670 0.74 -0.0
2,853,239 - BWI76_RS13670 0.74 +0.8
2,853,239 - BWI76_RS13670 0.74 -0.3
2,853,239 - BWI76_RS13670 0.74 -0.2
2,853,241 + BWI76_RS13670 0.74 +1.8
2,853,241 - BWI76_RS13670 0.74 -0.2
2,853,241 - BWI76_RS13670 0.74 -0.8
2,853,241 - BWI76_RS13670 0.74 +0.7
2,853,241 - BWI76_RS13670 0.74 +0.1
2,853,246 - BWI76_RS13670 0.75 +0.3
2,853,252 + BWI76_RS13670 0.75 -0.5
2,853,255 + BWI76_RS13670 0.75 +0.4
2,853,256 - BWI76_RS13670 0.75 -0.5
2,853,260 - BWI76_RS13670 0.76 +2.0
2,853,261 - BWI76_RS13670 0.76 +0.4
2,853,289 + BWI76_RS13670 0.78 -0.5
2,853,292 - BWI76_RS13670 0.78 -0.3
2,853,317 + BWI76_RS13670 0.80 -0.2
2,853,332 - BWI76_RS13670 0.81 +0.6
2,853,344 - BWI76_RS13670 0.82 +0.7
2,853,441 - BWI76_RS13670 0.89 -0.3
2,853,601 - -1.8
2,853,623 - -0.9
2,853,689 - -0.0
2,853,693 + +0.4
2,853,701 - -0.3
2,853,774 + +0.1
2,853,781 - +1.6
2,853,782 - +1.2
2,853,782 - +0.4
2,853,880 + BWI76_RS13675 0.16 +10.7
2,853,888 - BWI76_RS13675 0.18 +10.1
2,853,888 - BWI76_RS13675 0.18 +10.8
2,853,931 + BWI76_RS13675 0.25 +11.2
2,853,939 - BWI76_RS13675 0.27 +10.6
2,853,955 - BWI76_RS13675 0.29 +10.1
2,853,988 - BWI76_RS13675 0.35 +11.2
2,853,996 - BWI76_RS13675 0.36 +9.8
2,854,015 + BWI76_RS13675 0.40 +9.1
2,854,015 + BWI76_RS13675 0.40 +11.6
2,854,015 + BWI76_RS13675 0.40 +11.6
2,854,023 - BWI76_RS13675 0.41 +10.9
2,854,023 - BWI76_RS13675 0.41 +10.8
2,854,023 - BWI76_RS13675 0.41 +10.7
2,854,193 - BWI76_RS13675 0.71 +10.9
2,854,219 + BWI76_RS13675 0.75 +10.6
2,854,221 - BWI76_RS13675 0.76 +9.1
2,854,483 - +0.4
2,854,580 - -1.3
2,854,586 - -0.7
2,854,713 - BWI76_RS13680 0.16 -0.3
2,855,146 + BWI76_RS13680 0.45 -1.5
2,855,196 - BWI76_RS13680 0.48 -1.8
2,855,310 + BWI76_RS13680 0.56 +1.3

Or see this region's nucleotide sequence