Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12730

Experiment: Paraquat dichloride 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12725 and BWI76_RS12730 are separated by 355 nucleotidesBWI76_RS12730 and BWI76_RS12735 are separated by 623 nucleotides BWI76_RS12725: BWI76_RS12725 - outer membrane pore protein N, non-specific, at 2,651,654 to 2,652,802 _RS12725 BWI76_RS12730: BWI76_RS12730 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,653,158 to 2,656,685 _RS12730 BWI76_RS12735: BWI76_RS12735 - phage repressor protein, at 2,657,309 to 2,657,845 _RS12735 Position (kb) 2653 2654 2655 2656 2657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2652.159 kb on + strand, within BWI76_RS12725at 2652.159 kb on + strand, within BWI76_RS12725at 2652.159 kb on + strand, within BWI76_RS12725at 2652.160 kb on - strand, within BWI76_RS12725at 2652.160 kb on - strand, within BWI76_RS12725at 2652.163 kb on + strand, within BWI76_RS12725at 2652.167 kb on - strand, within BWI76_RS12725at 2652.177 kb on + strand, within BWI76_RS12725at 2652.177 kb on + strand, within BWI76_RS12725at 2652.182 kb on + strand, within BWI76_RS12725at 2652.187 kb on + strand, within BWI76_RS12725at 2652.209 kb on + strand, within BWI76_RS12725at 2652.309 kb on + strand, within BWI76_RS12725at 2652.309 kb on + strand, within BWI76_RS12725at 2652.354 kb on + strand, within BWI76_RS12725at 2652.377 kb on - strand, within BWI76_RS12725at 2652.377 kb on - strand, within BWI76_RS12725at 2652.377 kb on - strand, within BWI76_RS12725at 2652.377 kb on - strand, within BWI76_RS12725at 2652.396 kb on - strand, within BWI76_RS12725at 2652.398 kb on - strand, within BWI76_RS12725at 2652.398 kb on - strand, within BWI76_RS12725at 2652.398 kb on - strand, within BWI76_RS12725at 2652.398 kb on - strand, within BWI76_RS12725at 2652.433 kb on - strand, within BWI76_RS12725at 2652.440 kb on + strand, within BWI76_RS12725at 2652.451 kb on - strandat 2652.518 kb on + strand, within BWI76_RS12725at 2652.518 kb on + strandat 2652.519 kb on + strand, within BWI76_RS12725at 2652.519 kb on + strand, within BWI76_RS12725at 2652.519 kb on + strand, within BWI76_RS12725at 2652.527 kb on - strand, within BWI76_RS12725at 2652.527 kb on - strand, within BWI76_RS12725at 2652.527 kb on - strand, within BWI76_RS12725at 2652.527 kb on - strand, within BWI76_RS12725at 2652.577 kb on + strand, within BWI76_RS12725at 2652.577 kb on + strand, within BWI76_RS12725at 2652.631 kb on - strand, within BWI76_RS12725at 2653.024 kb on + strandat 2653.148 kb on - strandat 2653.161 kb on + strandat 2653.209 kb on - strandat 2653.217 kb on - strandat 2653.217 kb on - strandat 2653.243 kb on + strandat 2653.251 kb on - strandat 2653.251 kb on - strandat 2653.251 kb on - strandat 2653.253 kb on + strandat 2653.261 kb on + strandat 2653.310 kb on - strandat 2653.924 kb on - strand, within BWI76_RS12730at 2654.179 kb on + strand, within BWI76_RS12730at 2654.179 kb on + strand, within BWI76_RS12730at 2654.187 kb on - strand, within BWI76_RS12730at 2654.187 kb on - strand, within BWI76_RS12730at 2655.005 kb on - strand, within BWI76_RS12730at 2655.007 kb on + strandat 2655.026 kb on + strand, within BWI76_RS12730at 2655.138 kb on + strand, within BWI76_RS12730at 2655.195 kb on - strand, within BWI76_RS12730at 2655.284 kb on + strand, within BWI76_RS12730at 2655.759 kb on - strand, within BWI76_RS12730at 2655.830 kb on - strand, within BWI76_RS12730at 2656.127 kb on + strand, within BWI76_RS12730at 2656.209 kb on + strand, within BWI76_RS12730at 2656.217 kb on + strand, within BWI76_RS12730at 2656.217 kb on - strand, within BWI76_RS12730at 2656.757 kb on + strandat 2656.761 kb on - strandat 2656.952 kb on + strandat 2657.221 kb on + strandat 2657.268 kb on + strandat 2657.276 kb on - strandat 2657.441 kb on + strand, within BWI76_RS12735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
remove
2,652,159 + BWI76_RS12725 0.44 -0.0
2,652,159 + BWI76_RS12725 0.44 +1.5
2,652,159 + BWI76_RS12725 0.44 +0.4
2,652,160 - BWI76_RS12725 0.44 -0.3
2,652,160 - BWI76_RS12725 0.44 +0.0
2,652,163 + BWI76_RS12725 0.44 +3.0
2,652,167 - BWI76_RS12725 0.45 -0.1
2,652,177 + BWI76_RS12725 0.46 -2.6
2,652,177 + BWI76_RS12725 0.46 +0.9
2,652,182 + BWI76_RS12725 0.46 -0.8
2,652,187 + BWI76_RS12725 0.46 -0.4
2,652,209 + BWI76_RS12725 0.48 +1.1
2,652,309 + BWI76_RS12725 0.57 -0.6
2,652,309 + BWI76_RS12725 0.57 -0.2
2,652,354 + BWI76_RS12725 0.61 -0.7
2,652,377 - BWI76_RS12725 0.63 +0.4
2,652,377 - BWI76_RS12725 0.63 +2.5
2,652,377 - BWI76_RS12725 0.63 +0.1
2,652,377 - BWI76_RS12725 0.63 -0.8
2,652,396 - BWI76_RS12725 0.65 -0.1
2,652,398 - BWI76_RS12725 0.65 -0.7
2,652,398 - BWI76_RS12725 0.65 -0.7
2,652,398 - BWI76_RS12725 0.65 +1.2
2,652,398 - BWI76_RS12725 0.65 -0.9
2,652,433 - BWI76_RS12725 0.68 +0.2
2,652,440 + BWI76_RS12725 0.68 -0.9
2,652,451 - +2.0
2,652,518 + BWI76_RS12725 0.75 +1.0
2,652,518 + +0.6
2,652,519 + BWI76_RS12725 0.75 +0.7
2,652,519 + BWI76_RS12725 0.75 +1.4
2,652,519 + BWI76_RS12725 0.75 +2.8
2,652,527 - BWI76_RS12725 0.76 +3.0
2,652,527 - BWI76_RS12725 0.76 -0.2
2,652,527 - BWI76_RS12725 0.76 -0.2
2,652,527 - BWI76_RS12725 0.76 -0.9
2,652,577 + BWI76_RS12725 0.80 +0.3
2,652,577 + BWI76_RS12725 0.80 +0.4
2,652,631 - BWI76_RS12725 0.85 +0.9
2,653,024 + +0.1
2,653,148 - -1.8
2,653,161 + +0.3
2,653,209 - -1.6
2,653,217 - -0.2
2,653,217 - -1.3
2,653,243 + -0.7
2,653,251 - -2.5
2,653,251 - -1.3
2,653,251 - -1.2
2,653,253 + +0.2
2,653,261 + -0.5
2,653,310 - +0.2
2,653,924 - BWI76_RS12730 0.22 -0.0
2,654,179 + BWI76_RS12730 0.29 -1.8
2,654,179 + BWI76_RS12730 0.29 -1.7
2,654,187 - BWI76_RS12730 0.29 -1.7
2,654,187 - BWI76_RS12730 0.29 -3.5
2,655,005 - BWI76_RS12730 0.52 -1.4
2,655,007 + +2.0
2,655,026 + BWI76_RS12730 0.53 -2.1
2,655,138 + BWI76_RS12730 0.56 -1.3
2,655,195 - BWI76_RS12730 0.58 -0.0
2,655,284 + BWI76_RS12730 0.60 -0.8
2,655,759 - BWI76_RS12730 0.74 -0.4
2,655,830 - BWI76_RS12730 0.76 -0.5
2,656,127 + BWI76_RS12730 0.84 -1.1
2,656,209 + BWI76_RS12730 0.86 -0.6
2,656,217 + BWI76_RS12730 0.87 -3.1
2,656,217 - BWI76_RS12730 0.87 +1.0
2,656,757 + -2.6
2,656,761 - -0.5
2,656,952 + -0.4
2,657,221 + +1.8
2,657,268 + +0.6
2,657,276 - -0.0
2,657,441 + BWI76_RS12735 0.25 -0.8

Or see this region's nucleotide sequence