Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12725 and BWI76_RS12730 are separated by 355 nucleotides BWI76_RS12730 and BWI76_RS12735 are separated by 623 nucleotides
BWI76_RS12725: BWI76_RS12725 - outer membrane pore protein N, non-specific, at 2,651,654 to 2,652,802
_RS12725
BWI76_RS12730: BWI76_RS12730 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,653,158 to 2,656,685
_RS12730
BWI76_RS12735: BWI76_RS12735 - phage repressor protein, at 2,657,309 to 2,657,845
_RS12735
Position (kb)
2653
2654
2655
2656
2657 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2652.159 kb on + strand, within BWI76_RS12725 at 2652.159 kb on + strand, within BWI76_RS12725 at 2652.159 kb on + strand, within BWI76_RS12725 at 2652.160 kb on - strand, within BWI76_RS12725 at 2652.160 kb on - strand, within BWI76_RS12725 at 2652.163 kb on + strand, within BWI76_RS12725 at 2652.167 kb on - strand, within BWI76_RS12725 at 2652.177 kb on + strand, within BWI76_RS12725 at 2652.177 kb on + strand, within BWI76_RS12725 at 2652.182 kb on + strand, within BWI76_RS12725 at 2652.187 kb on + strand, within BWI76_RS12725 at 2652.209 kb on + strand, within BWI76_RS12725 at 2652.309 kb on + strand, within BWI76_RS12725 at 2652.309 kb on + strand, within BWI76_RS12725 at 2652.354 kb on + strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.396 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.433 kb on - strand, within BWI76_RS12725 at 2652.440 kb on + strand, within BWI76_RS12725 at 2652.451 kb on - strand at 2652.518 kb on + strand, within BWI76_RS12725 at 2652.518 kb on + strand at 2652.519 kb on + strand, within BWI76_RS12725 at 2652.519 kb on + strand, within BWI76_RS12725 at 2652.519 kb on + strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.577 kb on + strand, within BWI76_RS12725 at 2652.577 kb on + strand, within BWI76_RS12725 at 2652.631 kb on - strand, within BWI76_RS12725 at 2653.024 kb on + strand at 2653.148 kb on - strand at 2653.161 kb on + strand at 2653.209 kb on - strand at 2653.217 kb on - strand at 2653.217 kb on - strand at 2653.243 kb on + strand at 2653.251 kb on - strand at 2653.251 kb on - strand at 2653.251 kb on - strand at 2653.253 kb on + strand at 2653.261 kb on + strand at 2653.310 kb on - strand at 2653.924 kb on - strand, within BWI76_RS12730 at 2654.179 kb on + strand, within BWI76_RS12730 at 2654.179 kb on + strand, within BWI76_RS12730 at 2654.187 kb on - strand, within BWI76_RS12730 at 2654.187 kb on - strand, within BWI76_RS12730 at 2655.005 kb on - strand, within BWI76_RS12730 at 2655.007 kb on + strand at 2655.026 kb on + strand, within BWI76_RS12730 at 2655.138 kb on + strand, within BWI76_RS12730 at 2655.195 kb on - strand, within BWI76_RS12730 at 2655.284 kb on + strand, within BWI76_RS12730 at 2655.759 kb on - strand, within BWI76_RS12730 at 2655.830 kb on - strand, within BWI76_RS12730 at 2656.127 kb on + strand, within BWI76_RS12730 at 2656.209 kb on + strand, within BWI76_RS12730 at 2656.217 kb on + strand, within BWI76_RS12730 at 2656.217 kb on - strand, within BWI76_RS12730 at 2656.757 kb on + strand at 2656.761 kb on - strand at 2656.952 kb on + strand at 2657.221 kb on + strand at 2657.268 kb on + strand at 2657.276 kb on - strand at 2657.441 kb on + strand, within BWI76_RS12735
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 2,652,159 + BWI76_RS12725 0.44 -0.0 2,652,159 + BWI76_RS12725 0.44 +1.5 2,652,159 + BWI76_RS12725 0.44 +0.4 2,652,160 - BWI76_RS12725 0.44 -0.3 2,652,160 - BWI76_RS12725 0.44 +0.0 2,652,163 + BWI76_RS12725 0.44 +3.0 2,652,167 - BWI76_RS12725 0.45 -0.1 2,652,177 + BWI76_RS12725 0.46 -2.6 2,652,177 + BWI76_RS12725 0.46 +0.9 2,652,182 + BWI76_RS12725 0.46 -0.8 2,652,187 + BWI76_RS12725 0.46 -0.4 2,652,209 + BWI76_RS12725 0.48 +1.1 2,652,309 + BWI76_RS12725 0.57 -0.6 2,652,309 + BWI76_RS12725 0.57 -0.2 2,652,354 + BWI76_RS12725 0.61 -0.7 2,652,377 - BWI76_RS12725 0.63 +0.4 2,652,377 - BWI76_RS12725 0.63 +2.5 2,652,377 - BWI76_RS12725 0.63 +0.1 2,652,377 - BWI76_RS12725 0.63 -0.8 2,652,396 - BWI76_RS12725 0.65 -0.1 2,652,398 - BWI76_RS12725 0.65 -0.7 2,652,398 - BWI76_RS12725 0.65 -0.7 2,652,398 - BWI76_RS12725 0.65 +1.2 2,652,398 - BWI76_RS12725 0.65 -0.9 2,652,433 - BWI76_RS12725 0.68 +0.2 2,652,440 + BWI76_RS12725 0.68 -0.9 2,652,451 - +2.0 2,652,518 + BWI76_RS12725 0.75 +1.0 2,652,518 + +0.6 2,652,519 + BWI76_RS12725 0.75 +0.7 2,652,519 + BWI76_RS12725 0.75 +1.4 2,652,519 + BWI76_RS12725 0.75 +2.8 2,652,527 - BWI76_RS12725 0.76 +3.0 2,652,527 - BWI76_RS12725 0.76 -0.2 2,652,527 - BWI76_RS12725 0.76 -0.2 2,652,527 - BWI76_RS12725 0.76 -0.9 2,652,577 + BWI76_RS12725 0.80 +0.3 2,652,577 + BWI76_RS12725 0.80 +0.4 2,652,631 - BWI76_RS12725 0.85 +0.9 2,653,024 + +0.1 2,653,148 - -1.8 2,653,161 + +0.3 2,653,209 - -1.6 2,653,217 - -0.2 2,653,217 - -1.3 2,653,243 + -0.7 2,653,251 - -2.5 2,653,251 - -1.3 2,653,251 - -1.2 2,653,253 + +0.2 2,653,261 + -0.5 2,653,310 - +0.2 2,653,924 - BWI76_RS12730 0.22 -0.0 2,654,179 + BWI76_RS12730 0.29 -1.8 2,654,179 + BWI76_RS12730 0.29 -1.7 2,654,187 - BWI76_RS12730 0.29 -1.7 2,654,187 - BWI76_RS12730 0.29 -3.5 2,655,005 - BWI76_RS12730 0.52 -1.4 2,655,007 + +2.0 2,655,026 + BWI76_RS12730 0.53 -2.1 2,655,138 + BWI76_RS12730 0.56 -1.3 2,655,195 - BWI76_RS12730 0.58 -0.0 2,655,284 + BWI76_RS12730 0.60 -0.8 2,655,759 - BWI76_RS12730 0.74 -0.4 2,655,830 - BWI76_RS12730 0.76 -0.5 2,656,127 + BWI76_RS12730 0.84 -1.1 2,656,209 + BWI76_RS12730 0.86 -0.6 2,656,217 + BWI76_RS12730 0.87 -3.1 2,656,217 - BWI76_RS12730 0.87 +1.0 2,656,757 + -2.6 2,656,761 - -0.5 2,656,952 + -0.4 2,657,221 + +1.8 2,657,268 + +0.6 2,657,276 - -0.0 2,657,441 + BWI76_RS12735 0.25 -0.8
Or see this region's nucleotide sequence