Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11930 and BWI76_RS11935 are separated by 245 nucleotides BWI76_RS11935 and BWI76_RS11940 are separated by 394 nucleotides BWI76_RS11940 and BWI76_RS11945 are separated by 56 nucleotides BWI76_RS11945 and BWI76_RS11950 are separated by 161 nucleotides
BWI76_RS11930: BWI76_RS11930 - LysR family transcriptional regulator CysB, at 2,511,557 to 2,512,531
_RS11930
BWI76_RS11935: BWI76_RS11935 - YmiA family putative membrane protein, at 2,512,777 to 2,512,944
_RS11935
BWI76_RS11940: BWI76_RS11940 - aconitate hydratase 1, at 2,513,339 to 2,516,011
_RS11940
BWI76_RS11945: BWI76_RS11945 - GTP cyclohydrolase II, at 2,516,068 to 2,516,658
_RS11945
BWI76_RS11950: BWI76_RS11950 - phosphatidylglycerophosphatase B, at 2,516,820 to 2,517,587
_RS11950
Position (kb)
2513
2514
2515
2516
2517 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2512.580 kb on - strand at 2512.681 kb on + strand at 2512.860 kb on + strand, within BWI76_RS11935 at 2512.871 kb on + strand, within BWI76_RS11935 at 2512.893 kb on + strand, within BWI76_RS11935 at 2512.904 kb on + strand, within BWI76_RS11935 at 2512.904 kb on + strand at 2512.910 kb on + strand, within BWI76_RS11935 at 2512.949 kb on + strand at 2513.077 kb on + strand at 2513.131 kb on - strand at 2513.148 kb on + strand at 2513.151 kb on + strand at 2513.156 kb on - strand at 2513.159 kb on - strand at 2513.159 kb on - strand at 2513.159 kb on - strand at 2513.159 kb on - strand at 2513.159 kb on - strand at 2513.164 kb on - strand at 2513.173 kb on - strand at 2513.174 kb on + strand at 2513.174 kb on - strand at 2513.174 kb on - strand at 2513.174 kb on - strand at 2513.220 kb on + strand at 2513.234 kb on - strand at 2513.301 kb on + strand at 2513.310 kb on - strand at 2513.324 kb on + strand at 2513.326 kb on - strand at 2513.331 kb on - strand at 2513.332 kb on - strand at 2513.357 kb on - strand at 2513.380 kb on + strand at 2513.468 kb on + strand at 2513.889 kb on + strand, within BWI76_RS11940 at 2514.098 kb on - strand, within BWI76_RS11940 at 2514.098 kb on - strand at 2514.210 kb on + strand, within BWI76_RS11940 at 2514.363 kb on - strand, within BWI76_RS11940 at 2514.446 kb on + strand, within BWI76_RS11940 at 2514.819 kb on - strand, within BWI76_RS11940 at 2515.148 kb on + strand, within BWI76_RS11940 at 2515.153 kb on - strand, within BWI76_RS11940 at 2515.326 kb on - strand, within BWI76_RS11940 at 2515.761 kb on + strand at 2516.688 kb on - strand at 2516.753 kb on - strand at 2516.942 kb on + strand, within BWI76_RS11950 at 2516.947 kb on - strand, within BWI76_RS11950
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 2,512,580 - -1.4 2,512,681 + -1.1 2,512,860 + BWI76_RS11935 0.49 +0.3 2,512,871 + BWI76_RS11935 0.56 -0.5 2,512,893 + BWI76_RS11935 0.69 -0.7 2,512,904 + BWI76_RS11935 0.76 -1.2 2,512,904 + +0.7 2,512,910 + BWI76_RS11935 0.79 -0.7 2,512,949 + +0.4 2,513,077 + -0.6 2,513,131 - -0.7 2,513,148 + -1.1 2,513,151 + -0.5 2,513,156 - -0.3 2,513,159 - -0.0 2,513,159 - -0.6 2,513,159 - -0.5 2,513,159 - +0.2 2,513,159 - -0.8 2,513,164 - -0.5 2,513,173 - +0.2 2,513,174 + -2.0 2,513,174 - -1.4 2,513,174 - -0.1 2,513,174 - -0.1 2,513,220 + -2.8 2,513,234 - -0.9 2,513,301 + +0.7 2,513,310 - +0.4 2,513,324 + -0.5 2,513,326 - +0.5 2,513,331 - +1.4 2,513,332 - +0.2 2,513,357 - +2.0 2,513,380 + +1.2 2,513,468 + +1.5 2,513,889 + BWI76_RS11940 0.21 +0.5 2,514,098 - BWI76_RS11940 0.28 -0.2 2,514,098 - +1.4 2,514,210 + BWI76_RS11940 0.33 -0.5 2,514,363 - BWI76_RS11940 0.38 +0.3 2,514,446 + BWI76_RS11940 0.41 +1.0 2,514,819 - BWI76_RS11940 0.55 +0.9 2,515,148 + BWI76_RS11940 0.68 +0.6 2,515,153 - BWI76_RS11940 0.68 +1.4 2,515,326 - BWI76_RS11940 0.74 -0.2 2,515,761 + +0.7 2,516,688 - +0.4 2,516,753 - +0.1 2,516,942 + BWI76_RS11950 0.16 -0.2 2,516,947 - BWI76_RS11950 0.17 -0.9
Or see this region's nucleotide sequence