Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09265

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09260 and BWI76_RS09265 overlap by 1 nucleotidesBWI76_RS09265 and BWI76_RS09270 are separated by 140 nucleotidesBWI76_RS09270 and BWI76_RS09275 are separated by 16 nucleotides BWI76_RS09260: BWI76_RS09260 - portal vertex-like protein, at 1,950,127 to 1,951,152 _RS09260 BWI76_RS09265: BWI76_RS09265 - oxidoreductase, at 1,951,152 to 1,952,915 _RS09265 BWI76_RS09270: BWI76_RS09270 - capsid scaffold-like protein, at 1,953,056 to 1,953,889 _RS09270 BWI76_RS09275: BWI76_RS09275 - major capsid protein, at 1,953,906 to 1,954,958 _RS09275 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1950.249 kb on - strand, within BWI76_RS09260at 1950.249 kb on - strand, within BWI76_RS09260at 1950.249 kb on - strand, within BWI76_RS09260at 1950.251 kb on + strand, within BWI76_RS09260at 1950.252 kb on - strand, within BWI76_RS09260at 1950.259 kb on - strand, within BWI76_RS09260at 1950.259 kb on - strand, within BWI76_RS09260at 1950.260 kb on - strand, within BWI76_RS09260at 1950.266 kb on + strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.274 kb on - strand, within BWI76_RS09260at 1950.275 kb on - strand, within BWI76_RS09260at 1950.280 kb on - strand, within BWI76_RS09260at 1950.284 kb on - strand, within BWI76_RS09260at 1950.284 kb on - strand, within BWI76_RS09260at 1950.289 kb on - strand, within BWI76_RS09260at 1950.292 kb on - strand, within BWI76_RS09260at 1950.297 kb on - strand, within BWI76_RS09260at 1950.314 kb on + strand, within BWI76_RS09260at 1950.314 kb on + strand, within BWI76_RS09260at 1950.322 kb on - strand, within BWI76_RS09260at 1950.322 kb on - strand, within BWI76_RS09260at 1950.322 kb on - strand, within BWI76_RS09260at 1950.322 kb on - strandat 1950.353 kb on + strand, within BWI76_RS09260at 1950.379 kb on - strand, within BWI76_RS09260at 1950.432 kb on - strand, within BWI76_RS09260at 1950.432 kb on - strand, within BWI76_RS09260at 1950.494 kb on + strand, within BWI76_RS09260at 1950.499 kb on + strand, within BWI76_RS09260at 1950.499 kb on + strand, within BWI76_RS09260at 1950.565 kb on + strand, within BWI76_RS09260at 1950.596 kb on + strand, within BWI76_RS09260at 1950.602 kb on - strand, within BWI76_RS09260at 1950.604 kb on - strand, within BWI76_RS09260at 1950.725 kb on - strand, within BWI76_RS09260at 1950.940 kb on + strand, within BWI76_RS09260at 1951.038 kb on + strand, within BWI76_RS09260at 1951.141 kb on + strandat 1951.241 kb on - strandat 1951.390 kb on + strand, within BWI76_RS09265at 1951.546 kb on + strand, within BWI76_RS09265at 1951.778 kb on - strand, within BWI76_RS09265at 1951.945 kb on + strand, within BWI76_RS09265at 1951.985 kb on - strand, within BWI76_RS09265at 1952.017 kb on + strand, within BWI76_RS09265at 1952.190 kb on + strand, within BWI76_RS09265at 1952.244 kb on - strand, within BWI76_RS09265at 1952.260 kb on + strand, within BWI76_RS09265at 1952.272 kb on + strand, within BWI76_RS09265at 1952.370 kb on - strand, within BWI76_RS09265at 1952.374 kb on - strand, within BWI76_RS09265at 1952.374 kb on - strand, within BWI76_RS09265at 1952.410 kb on - strand, within BWI76_RS09265at 1952.599 kb on - strand, within BWI76_RS09265at 1952.750 kb on + strandat 1952.767 kb on - strandat 1952.767 kb on - strandat 1952.935 kb on + strandat 1952.938 kb on - strandat 1952.993 kb on + strandat 1953.153 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.420 kb on + strand, within BWI76_RS09270at 1953.694 kb on - strand, within BWI76_RS09270at 1953.741 kb on - strand, within BWI76_RS09270

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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1,950,249 - BWI76_RS09260 0.12 -1.2
1,950,249 - BWI76_RS09260 0.12 -0.5
1,950,249 - BWI76_RS09260 0.12 +1.4
1,950,251 + BWI76_RS09260 0.12 +0.8
1,950,252 - BWI76_RS09260 0.12 +1.5
1,950,259 - BWI76_RS09260 0.13 -0.5
1,950,259 - BWI76_RS09260 0.13 +0.6
1,950,260 - BWI76_RS09260 0.13 +0.2
1,950,266 + BWI76_RS09260 0.14 +0.8
1,950,274 - BWI76_RS09260 0.14 -0.0
1,950,274 - BWI76_RS09260 0.14 +0.5
1,950,274 - BWI76_RS09260 0.14 -3.4
1,950,274 - BWI76_RS09260 0.14 -1.9
1,950,275 - BWI76_RS09260 0.14 -1.9
1,950,280 - BWI76_RS09260 0.15 +0.3
1,950,284 - BWI76_RS09260 0.15 +2.0
1,950,284 - BWI76_RS09260 0.15 +0.8
1,950,289 - BWI76_RS09260 0.16 +1.9
1,950,292 - BWI76_RS09260 0.16 +1.2
1,950,297 - BWI76_RS09260 0.17 -0.0
1,950,314 + BWI76_RS09260 0.18 +2.3
1,950,314 + BWI76_RS09260 0.18 -0.2
1,950,322 - BWI76_RS09260 0.19 -1.2
1,950,322 - BWI76_RS09260 0.19 -0.4
1,950,322 - BWI76_RS09260 0.19 +0.8
1,950,322 - +2.5
1,950,353 + BWI76_RS09260 0.22 +0.5
1,950,379 - BWI76_RS09260 0.25 -0.0
1,950,432 - BWI76_RS09260 0.30 -0.4
1,950,432 - BWI76_RS09260 0.30 +1.2
1,950,494 + BWI76_RS09260 0.36 -0.3
1,950,499 + BWI76_RS09260 0.36 +1.1
1,950,499 + BWI76_RS09260 0.36 -0.0
1,950,565 + BWI76_RS09260 0.43 -0.6
1,950,596 + BWI76_RS09260 0.46 +1.8
1,950,602 - BWI76_RS09260 0.46 +0.2
1,950,604 - BWI76_RS09260 0.46 -2.4
1,950,725 - BWI76_RS09260 0.58 -0.8
1,950,940 + BWI76_RS09260 0.79 +0.0
1,951,038 + BWI76_RS09260 0.89 +0.6
1,951,141 + +0.2
1,951,241 - -0.0
1,951,390 + BWI76_RS09265 0.13 -1.3
1,951,546 + BWI76_RS09265 0.22 +1.5
1,951,778 - BWI76_RS09265 0.35 +0.9
1,951,945 + BWI76_RS09265 0.45 +3.3
1,951,985 - BWI76_RS09265 0.47 +0.2
1,952,017 + BWI76_RS09265 0.49 +0.9
1,952,190 + BWI76_RS09265 0.59 +0.2
1,952,244 - BWI76_RS09265 0.62 +0.5
1,952,260 + BWI76_RS09265 0.63 +1.4
1,952,272 + BWI76_RS09265 0.63 -0.0
1,952,370 - BWI76_RS09265 0.69 -0.2
1,952,374 - BWI76_RS09265 0.69 +0.1
1,952,374 - BWI76_RS09265 0.69 -0.8
1,952,410 - BWI76_RS09265 0.71 -1.2
1,952,599 - BWI76_RS09265 0.82 +0.9
1,952,750 + -2.9
1,952,767 - -0.2
1,952,767 - +0.0
1,952,935 + +0.7
1,952,938 - +0.3
1,952,993 + -1.2
1,953,153 + BWI76_RS09270 0.12 -0.1
1,953,166 + BWI76_RS09270 0.13 +0.8
1,953,166 + BWI76_RS09270 0.13 -2.1
1,953,166 + BWI76_RS09270 0.13 -2.6
1,953,209 + BWI76_RS09270 0.18 +2.1
1,953,209 + BWI76_RS09270 0.18 -0.2
1,953,209 + BWI76_RS09270 0.18 +0.6
1,953,420 + BWI76_RS09270 0.44 -0.5
1,953,694 - BWI76_RS09270 0.76 +1.0
1,953,741 - BWI76_RS09270 0.82 -1.2

Or see this region's nucleotide sequence