Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07715

Experiment: Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07705 and BWI76_RS07710 are separated by 27 nucleotidesBWI76_RS07710 and BWI76_RS07715 are separated by 10 nucleotidesBWI76_RS07715 and BWI76_RS07720 are separated by 85 nucleotidesBWI76_RS07720 and BWI76_RS07725 overlap by 4 nucleotides BWI76_RS07705: BWI76_RS07705 - enterochelin esterase, at 1,632,362 to 1,633,561 _RS07705 BWI76_RS07710: BWI76_RS07710 - invasin-like protein, at 1,633,589 to 1,633,792 _RS07710 BWI76_RS07715: BWI76_RS07715 - non-ribosomal peptide synthetase, at 1,633,803 to 1,637,690 _RS07715 BWI76_RS07720: BWI76_RS07720 - iron-enterobactin transporter ATP-binding protein, at 1,637,776 to 1,638,570 _RS07720 BWI76_RS07725: BWI76_RS07725 - iron-enterobactin transporter permease, at 1,638,567 to 1,639,559 _RS07725 Position (kb) 1633 1634 1635 1636 1637 1638Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1632.875 kb on - strand, within BWI76_RS07705at 1632.971 kb on + strand, within BWI76_RS07705at 1633.541 kb on + strandat 1633.763 kb on + strand, within BWI76_RS07710at 1633.763 kb on + strand, within BWI76_RS07710at 1633.763 kb on + strand, within BWI76_RS07710at 1633.897 kb on + strandat 1633.905 kb on - strandat 1633.972 kb on + strandat 1633.980 kb on - strandat 1634.061 kb on - strandat 1634.158 kb on + strandat 1634.397 kb on + strand, within BWI76_RS07715at 1634.410 kb on - strand, within BWI76_RS07715at 1634.558 kb on - strand, within BWI76_RS07715at 1634.877 kb on + strand, within BWI76_RS07715at 1634.999 kb on + strand, within BWI76_RS07715at 1635.222 kb on - strand, within BWI76_RS07715at 1635.739 kb on + strand, within BWI76_RS07715at 1635.802 kb on - strand, within BWI76_RS07715at 1636.142 kb on - strand, within BWI76_RS07715at 1636.209 kb on - strand, within BWI76_RS07715at 1636.232 kb on + strand, within BWI76_RS07715at 1636.240 kb on - strand, within BWI76_RS07715at 1636.259 kb on - strand, within BWI76_RS07715at 1636.334 kb on + strand, within BWI76_RS07715at 1637.073 kb on - strand, within BWI76_RS07715at 1637.606 kb on + strandat 1637.754 kb on + strandat 1638.416 kb on - strand, within BWI76_RS07720at 1638.551 kb on + strandat 1638.661 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml
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1,632,875 - BWI76_RS07705 0.43 -2.5
1,632,971 + BWI76_RS07705 0.51 +0.8
1,633,541 + -1.1
1,633,763 + BWI76_RS07710 0.85 +0.5
1,633,763 + BWI76_RS07710 0.85 +0.7
1,633,763 + BWI76_RS07710 0.85 +0.4
1,633,897 + -0.6
1,633,905 - +0.9
1,633,972 + +0.7
1,633,980 - +1.0
1,634,061 - +0.7
1,634,158 + +1.1
1,634,397 + BWI76_RS07715 0.15 +0.7
1,634,410 - BWI76_RS07715 0.16 +0.5
1,634,558 - BWI76_RS07715 0.19 +1.4
1,634,877 + BWI76_RS07715 0.28 +1.4
1,634,999 + BWI76_RS07715 0.31 +2.0
1,635,222 - BWI76_RS07715 0.36 +1.0
1,635,739 + BWI76_RS07715 0.50 +0.8
1,635,802 - BWI76_RS07715 0.51 +0.3
1,636,142 - BWI76_RS07715 0.60 +1.2
1,636,209 - BWI76_RS07715 0.62 +0.4
1,636,232 + BWI76_RS07715 0.62 -1.3
1,636,240 - BWI76_RS07715 0.63 +0.5
1,636,259 - BWI76_RS07715 0.63 +0.6
1,636,334 + BWI76_RS07715 0.65 +3.7
1,637,073 - BWI76_RS07715 0.84 +1.9
1,637,606 + +1.2
1,637,754 + -1.2
1,638,416 - BWI76_RS07720 0.81 +5.7
1,638,551 + +4.9
1,638,661 + +4.9

Or see this region's nucleotide sequence