Experiment: Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04475 and BWI76_RS04480 are separated by 103 nucleotides BWI76_RS04480 and BWI76_RS04485 are separated by 261 nucleotides
BWI76_RS04475: BWI76_RS04475 - ROK family protein, at 927,076 to 927,960
_RS04475
BWI76_RS04480: BWI76_RS04480 - YgdI/YgdR family lipoprotein, at 928,064 to 928,297
_RS04480
BWI76_RS04485: BWI76_RS04485 - hypothetical protein, at 928,559 to 930,115
_RS04485
Position (kb) 928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.074 kb on - strand at 927.433 kb on + strand, within BWI76_RS04475 at 927.433 kb on + strand, within BWI76_RS04475 at 927.441 kb on - strand, within BWI76_RS04475 at 927.613 kb on - strand, within BWI76_RS04475 at 927.747 kb on + strand, within BWI76_RS04475 at 927.752 kb on + strand, within BWI76_RS04475 at 927.815 kb on + strand, within BWI76_RS04475 at 927.823 kb on - strand, within BWI76_RS04475 at 927.907 kb on + strand at 927.910 kb on - strand at 927.915 kb on - strand at 927.922 kb on + strand at 927.930 kb on - strand at 928.017 kb on - strand at 928.077 kb on - strand at 928.109 kb on + strand, within BWI76_RS04480 at 928.167 kb on - strand, within BWI76_RS04480 at 928.208 kb on + strand, within BWI76_RS04480 at 928.208 kb on + strand, within BWI76_RS04480 at 928.234 kb on + strand, within BWI76_RS04480 at 928.242 kb on + strand, within BWI76_RS04480 at 928.250 kb on - strand, within BWI76_RS04480 at 928.250 kb on - strand, within BWI76_RS04480 at 928.252 kb on + strand, within BWI76_RS04480 at 928.252 kb on + strand, within BWI76_RS04480 at 928.260 kb on - strand, within BWI76_RS04480 at 928.260 kb on - strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.275 kb on - strand at 928.275 kb on - strand at 928.288 kb on + strand at 928.296 kb on - strand at 928.296 kb on - strand at 928.296 kb on - strand at 928.312 kb on + strand at 928.312 kb on - strand at 928.313 kb on - strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.322 kb on - strand at 928.322 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.346 kb on + strand at 928.346 kb on + strand at 928.346 kb on + strand at 928.354 kb on - strand at 928.354 kb on - strand at 928.354 kb on - strand at 928.354 kb on - strand at 928.388 kb on - strand at 928.390 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.395 kb on - strand at 928.397 kb on + strand at 928.399 kb on + strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.403 kb on + strand at 928.403 kb on + strand at 928.407 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.412 kb on - strand at 928.438 kb on - strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.504 kb on - strand at 928.561 kb on - strand at 928.892 kb on - strand, within BWI76_RS04485 at 928.892 kb on - strand, within BWI76_RS04485 at 928.892 kb on - strand, within BWI76_RS04485 at 928.973 kb on + strand, within BWI76_RS04485 at 929.256 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.266 kb on + strand, within BWI76_RS04485 at 929.268 kb on - strand, within BWI76_RS04485 at 929.269 kb on - strand, within BWI76_RS04485 at 929.269 kb on - strand, within BWI76_RS04485 at 929.274 kb on - strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand at 929.287 kb on + strand, within BWI76_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.1 mg/ml remove 927,074 - -0.3 927,433 + BWI76_RS04475 0.40 +0.5 927,433 + BWI76_RS04475 0.40 +2.0 927,441 - BWI76_RS04475 0.41 -0.5 927,613 - BWI76_RS04475 0.61 +2.0 927,747 + BWI76_RS04475 0.76 -1.3 927,752 + BWI76_RS04475 0.76 -0.5 927,815 + BWI76_RS04475 0.84 -0.2 927,823 - BWI76_RS04475 0.84 +0.3 927,907 + -1.3 927,910 - -0.9 927,915 - -0.1 927,922 + -0.4 927,930 - +1.5 928,017 - +1.5 928,077 - -0.6 928,109 + BWI76_RS04480 0.19 +0.0 928,167 - BWI76_RS04480 0.44 -0.7 928,208 + BWI76_RS04480 0.62 -0.6 928,208 + BWI76_RS04480 0.62 +0.6 928,234 + BWI76_RS04480 0.73 -0.1 928,242 + BWI76_RS04480 0.76 -2.9 928,250 - BWI76_RS04480 0.79 -2.0 928,250 - BWI76_RS04480 0.79 -2.0 928,252 + BWI76_RS04480 0.80 +0.7 928,252 + BWI76_RS04480 0.80 +0.5 928,260 - BWI76_RS04480 0.84 +0.4 928,260 - BWI76_RS04480 0.84 -1.3 928,267 + BWI76_RS04480 0.87 -0.9 928,267 + BWI76_RS04480 0.87 +0.1 928,267 + BWI76_RS04480 0.87 -1.3 928,267 + BWI76_RS04480 0.87 -0.2 928,275 - -1.1 928,275 - -0.1 928,288 + +0.5 928,296 - -1.4 928,296 - +1.5 928,296 - -1.2 928,312 + -0.4 928,312 - +0.1 928,313 - +1.1 928,320 + -0.2 928,320 + -1.1 928,320 + -0.9 928,320 + -1.0 928,320 + +0.0 928,322 - -0.7 928,322 - -0.7 928,328 - +0.9 928,328 - +0.3 928,328 - +0.1 928,328 - +0.2 928,328 - +0.7 928,328 - +0.2 928,328 - +0.6 928,328 - -0.8 928,328 - -1.8 928,346 + -0.4 928,346 + -1.0 928,346 + +0.1 928,354 - +1.1 928,354 - -1.2 928,354 - -1.8 928,354 - -0.4 928,388 - -0.7 928,390 - +1.0 928,392 + -0.2 928,392 + +1.6 928,395 - -0.2 928,397 + -1.8 928,399 + +0.7 928,400 - -0.7 928,400 - -0.8 928,400 - +1.1 928,400 - -0.4 928,400 - -2.1 928,400 - -0.3 928,403 + +0.8 928,403 + -0.7 928,407 - +0.4 928,411 - +0.3 928,411 - -0.0 928,411 - +1.0 928,412 - -1.6 928,438 - +0.1 928,476 + +1.6 928,476 + +0.4 928,476 + -1.1 928,476 + +0.5 928,476 + -0.4 928,476 + +2.2 928,476 + -0.9 928,484 - +1.0 928,484 - -0.4 928,484 - +3.1 928,484 - -0.8 928,484 - -1.7 928,484 - -0.6 928,484 - -1.2 928,484 - +0.9 928,484 - -2.8 928,504 - +0.5 928,561 - +2.8 928,892 - BWI76_RS04485 0.21 -1.5 928,892 - BWI76_RS04485 0.21 -1.0 928,892 - BWI76_RS04485 0.21 +1.5 928,973 + BWI76_RS04485 0.27 +1.5 929,256 + BWI76_RS04485 0.45 -0.1 929,261 + BWI76_RS04485 0.45 -0.4 929,261 + BWI76_RS04485 0.45 +0.3 929,261 + BWI76_RS04485 0.45 +0.3 929,261 + BWI76_RS04485 0.45 -1.2 929,266 + BWI76_RS04485 0.45 -0.6 929,268 - BWI76_RS04485 0.46 +0.8 929,269 - BWI76_RS04485 0.46 -0.0 929,269 - BWI76_RS04485 0.46 +2.5 929,274 - BWI76_RS04485 0.46 +0.3 929,284 + BWI76_RS04485 0.47 +0.2 929,284 + BWI76_RS04485 0.47 -0.5 929,284 + BWI76_RS04485 0.47 +0.7 929,284 + BWI76_RS04485 0.47 -1.1 929,284 + +1.1 929,287 + BWI76_RS04485 0.47 +0.5
Or see this region's nucleotide sequence