Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2146

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2145 and DVU2146 are separated by 148 nucleotidesDVU2146 and sda are separated by 56 nucleotides DVU2145: DVU2145 - chloramphenicol acetyltransferase, putative (TIGR), at 2,243,015 to 2,243,665 DVU2145 DVU2146: DVU2146 - hypothetical protein (TIGR), at 2,243,814 to 2,243,969 DVU2146 DVU2147: sda - L-serine dehydratase, putative (TIGR), at 2,244,026 to 2,245,534 sda Position (kb) 2243 2244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2242.847 kb on - strandat 2242.879 kb on + strandat 2242.927 kb on - strandat 2242.966 kb on + strandat 2242.978 kb on + strandat 2242.986 kb on - strandat 2242.993 kb on - strandat 2243.027 kb on + strandat 2243.707 kb on - strandat 2243.747 kb on + strandat 2244.102 kb on - strandat 2244.120 kb on + strandat 2244.120 kb on + strandat 2244.173 kb on - strandat 2244.174 kb on - strandat 2244.318 kb on + strand, within sdaat 2244.332 kb on - strand, within sdaat 2244.495 kb on + strand, within sdaat 2244.495 kb on + strand, within sdaat 2244.503 kb on - strand, within sdaat 2244.613 kb on - strand, within sdaat 2244.727 kb on - strand, within sdaat 2244.740 kb on + strand, within sdaat 2244.783 kb on + strand, within sdaat 2244.878 kb on + strand, within sda

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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2,242,847 - -1.1
2,242,879 + +0.2
2,242,927 - +0.1
2,242,966 + +1.0
2,242,978 + -0.6
2,242,986 - +0.1
2,242,993 - -0.3
2,243,027 + +0.0
2,243,707 - +0.4
2,243,747 + -0.3
2,244,102 - -3.6
2,244,120 + -4.2
2,244,120 + -0.8
2,244,173 - -0.2
2,244,174 - -1.4
2,244,318 + sda DVU2147 0.19 -2.6
2,244,332 - sda DVU2147 0.20 -2.2
2,244,495 + sda DVU2147 0.31 -4.7
2,244,495 + sda DVU2147 0.31 -2.2
2,244,503 - sda DVU2147 0.32 -1.8
2,244,613 - sda DVU2147 0.39 -1.2
2,244,727 - sda DVU2147 0.46 -1.8
2,244,740 + sda DVU2147 0.47 -3.0
2,244,783 + sda DVU2147 0.50 -4.1
2,244,878 + sda DVU2147 0.56 -1.4

Or see this region's nucleotide sequence