Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.523.1 and Xcc-8004.525.1 are separated by 158 nucleotides Xcc-8004.525.1 and Xcc-8004.526.1 overlap by 4 nucleotides
Xcc-8004.523.1: Xcc-8004.523.1 - Cysteine desulfurase (EC 2.8.1.7), at 477,301 to 478,596
Xcc-8004.523.1
Xcc-8004.525.1: Xcc-8004.525.1 - Mobile element protein, at 478,755 to 479,018
Xcc-8004.525.1
Xcc-8004.526.1: Xcc-8004.526.1 - Mobile element protein, at 479,015 to 479,857
Xcc-8004.526.1
Position (kb) 478
479
480 Strain fitness (log2 ratio) -1
0
1 at 477.813 kb on - strand, within Xcc-8004.523.1 at 477.859 kb on + strand, within Xcc-8004.523.1 at 477.859 kb on + strand, within Xcc-8004.523.1 at 477.863 kb on + strand, within Xcc-8004.523.1 at 477.863 kb on + strand, within Xcc-8004.523.1 at 477.864 kb on - strand, within Xcc-8004.523.1 at 477.919 kb on - strand, within Xcc-8004.523.1 at 477.919 kb on - strand, within Xcc-8004.523.1 at 477.945 kb on - strand, within Xcc-8004.523.1 at 477.945 kb on - strand, within Xcc-8004.523.1 at 478.103 kb on + strand, within Xcc-8004.523.1 at 478.180 kb on - strand, within Xcc-8004.523.1 at 478.180 kb on - strand, within Xcc-8004.523.1 at 478.282 kb on - strand, within Xcc-8004.523.1 at 478.353 kb on - strand, within Xcc-8004.523.1 at 478.356 kb on - strand, within Xcc-8004.523.1 at 478.474 kb on - strand at 478.518 kb on - strand at 478.530 kb on - strand at 478.530 kb on - strand at 478.530 kb on - strand at 478.533 kb on + strand at 478.533 kb on + strand at 479.920 kb on - strand at 479.920 kb on - strand at 479.960 kb on + strand at 479.961 kb on - strand at 479.961 kb on - strand at 479.969 kb on + strand at 479.969 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.994 kb on + strand at 479.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 477,813 - Xcc-8004.523.1 0.40 -0.2 477,859 + Xcc-8004.523.1 0.43 -0.2 477,859 + Xcc-8004.523.1 0.43 +0.6 477,863 + Xcc-8004.523.1 0.43 -0.2 477,863 + Xcc-8004.523.1 0.43 +0.1 477,864 - Xcc-8004.523.1 0.43 +1.2 477,919 - Xcc-8004.523.1 0.48 +0.3 477,919 - Xcc-8004.523.1 0.48 +0.5 477,945 - Xcc-8004.523.1 0.50 +0.4 477,945 - Xcc-8004.523.1 0.50 -0.0 478,103 + Xcc-8004.523.1 0.62 -0.8 478,180 - Xcc-8004.523.1 0.68 +0.6 478,180 - Xcc-8004.523.1 0.68 +0.0 478,282 - Xcc-8004.523.1 0.76 +0.0 478,353 - Xcc-8004.523.1 0.81 +1.2 478,356 - Xcc-8004.523.1 0.81 +0.2 478,474 - +0.3 478,518 - +0.5 478,530 - -0.4 478,530 - +1.7 478,530 - -0.6 478,533 + -0.6 478,533 + +1.4 479,920 - -0.4 479,920 - -0.3 479,960 + -0.9 479,961 - -0.8 479,961 - -0.5 479,969 + -0.2 479,969 + -1.5 479,994 + +0.2 479,994 + -0.6 479,994 + -0.6 479,994 + +0.1 479,994 + -0.6 479,995 - +0.4
Or see this region's nucleotide sequence