Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4940.1 and Xcc-8004.4941.1 overlap by 4 nucleotides Xcc-8004.4941.1 and Xcc-8004.4942.1 are separated by 125 nucleotides Xcc-8004.4942.1 and Xcc-8004.4944.1 overlap by 4 nucleotides
Xcc-8004.4940.1: Xcc-8004.4940.1 - PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase, at 4,695,318 to 4,696,700
Xcc-8004.4940.1
Xcc-8004.4941.1: Xcc-8004.4941.1 - FIG01210368: hypothetical protein, at 4,696,697 to 4,697,299
Xcc-8004.4941.1
Xcc-8004.4942.1: Xcc-8004.4942.1 - Two-component system regulatory protein, at 4,697,425 to 4,698,090
Xcc-8004.4942.1
Xcc-8004.4944.1: Xcc-8004.4944.1 - Two-component system sensor protein, at 4,698,087 to 4,699,295
Xcc-8004.4944.1
Position (kb) 4697
4698
4699 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4696.492 kb on + strand, within Xcc-8004.4940.1 at 4696.493 kb on - strand, within Xcc-8004.4940.1 at 4696.493 kb on - strand, within Xcc-8004.4940.1 at 4696.636 kb on - strand at 4696.818 kb on + strand, within Xcc-8004.4941.1 at 4696.818 kb on + strand, within Xcc-8004.4941.1 at 4696.818 kb on + strand, within Xcc-8004.4941.1 at 4696.818 kb on + strand, within Xcc-8004.4941.1 at 4696.818 kb on + strand, within Xcc-8004.4941.1 at 4696.818 kb on + strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4696.819 kb on - strand, within Xcc-8004.4941.1 at 4697.019 kb on + strand, within Xcc-8004.4941.1 at 4697.019 kb on + strand, within Xcc-8004.4941.1 at 4697.019 kb on + strand, within Xcc-8004.4941.1 at 4697.019 kb on + strand, within Xcc-8004.4941.1 at 4697.020 kb on - strand, within Xcc-8004.4941.1 at 4697.020 kb on - strand, within Xcc-8004.4941.1 at 4697.020 kb on - strand, within Xcc-8004.4941.1 at 4697.020 kb on - strand, within Xcc-8004.4941.1 at 4697.020 kb on - strand, within Xcc-8004.4941.1 at 4697.020 kb on - strand, within Xcc-8004.4941.1 at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.240 kb on - strand at 4697.240 kb on - strand at 4697.240 kb on - strand at 4697.240 kb on - strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.294 kb on + strand at 4697.352 kb on + strand at 4697.352 kb on + strand at 4697.352 kb on + strand at 4697.353 kb on - strand at 4697.353 kb on - strand at 4697.353 kb on - strand at 4697.353 kb on - strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.364 kb on - strand at 4697.364 kb on - strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.558 kb on - strand, within Xcc-8004.4942.1 at 4697.558 kb on - strand, within Xcc-8004.4942.1 at 4697.558 kb on - strand, within Xcc-8004.4942.1 at 4697.617 kb on + strand, within Xcc-8004.4942.1 at 4697.617 kb on + strand, within Xcc-8004.4942.1 at 4697.617 kb on + strand, within Xcc-8004.4942.1 at 4697.618 kb on - strand, within Xcc-8004.4942.1 at 4697.618 kb on - strand, within Xcc-8004.4942.1 at 4697.632 kb on + strand, within Xcc-8004.4942.1 at 4697.632 kb on + strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.640 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.717 kb on - strand, within Xcc-8004.4942.1 at 4697.717 kb on - strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.960 kb on - strand, within Xcc-8004.4942.1 at 4697.960 kb on - strand, within Xcc-8004.4942.1 at 4698.001 kb on + strand, within Xcc-8004.4942.1 at 4698.001 kb on + strand, within Xcc-8004.4942.1 at 4698.001 kb on + strand, within Xcc-8004.4942.1 at 4698.002 kb on - strand, within Xcc-8004.4942.1 at 4698.002 kb on - strand, within Xcc-8004.4942.1 at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.064 kb on + strand at 4698.064 kb on + strand at 4698.064 kb on + strand at 4698.064 kb on + strand at 4698.065 kb on - strand at 4698.065 kb on - strand at 4698.396 kb on - strand, within Xcc-8004.4944.1 at 4698.666 kb on + strand, within Xcc-8004.4944.1 at 4698.666 kb on + strand, within Xcc-8004.4944.1 at 4698.666 kb on + strand, within Xcc-8004.4944.1 at 4698.667 kb on - strand, within Xcc-8004.4944.1 at 4698.667 kb on - strand, within Xcc-8004.4944.1 at 4698.667 kb on - strand, within Xcc-8004.4944.1 at 4698.749 kb on + strand, within Xcc-8004.4944.1 at 4698.750 kb on - strand, within Xcc-8004.4944.1 at 4698.813 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.851 kb on - strand, within Xcc-8004.4944.1 at 4698.851 kb on - strand, within Xcc-8004.4944.1 at 4698.851 kb on - strand, within Xcc-8004.4944.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 4,696,492 + Xcc-8004.4940.1 0.85 -0.6 4,696,493 - Xcc-8004.4940.1 0.85 -1.6 4,696,493 - Xcc-8004.4940.1 0.85 +0.0 4,696,636 - +1.4 4,696,818 + Xcc-8004.4941.1 0.20 +0.4 4,696,818 + Xcc-8004.4941.1 0.20 -0.6 4,696,818 + Xcc-8004.4941.1 0.20 +1.7 4,696,818 + Xcc-8004.4941.1 0.20 +1.1 4,696,818 + Xcc-8004.4941.1 0.20 +0.3 4,696,818 + Xcc-8004.4941.1 0.20 -0.3 4,696,819 - Xcc-8004.4941.1 0.20 +0.2 4,696,819 - Xcc-8004.4941.1 0.20 +0.9 4,696,819 - Xcc-8004.4941.1 0.20 -0.8 4,696,819 - Xcc-8004.4941.1 0.20 -0.7 4,696,819 - Xcc-8004.4941.1 0.20 -0.3 4,696,819 - Xcc-8004.4941.1 0.20 -0.2 4,696,819 - Xcc-8004.4941.1 0.20 -0.4 4,697,019 + Xcc-8004.4941.1 0.53 +0.2 4,697,019 + Xcc-8004.4941.1 0.53 +0.1 4,697,019 + Xcc-8004.4941.1 0.53 +0.2 4,697,019 + Xcc-8004.4941.1 0.53 +2.4 4,697,020 - Xcc-8004.4941.1 0.54 +1.1 4,697,020 - Xcc-8004.4941.1 0.54 -1.0 4,697,020 - Xcc-8004.4941.1 0.54 -0.4 4,697,020 - Xcc-8004.4941.1 0.54 -1.1 4,697,020 - Xcc-8004.4941.1 0.54 -0.8 4,697,020 - Xcc-8004.4941.1 0.54 +0.0 4,697,239 + +0.4 4,697,239 + -0.1 4,697,239 + -0.7 4,697,239 + +0.3 4,697,239 + -1.5 4,697,239 + +0.4 4,697,240 - -0.3 4,697,240 - -0.6 4,697,240 - -0.6 4,697,240 - -0.8 4,697,241 + +0.2 4,697,241 + -0.5 4,697,241 + -0.3 4,697,241 + -0.2 4,697,241 + +0.3 4,697,241 + -1.1 4,697,241 + +0.4 4,697,241 + -1.6 4,697,242 - +0.9 4,697,242 - +0.4 4,697,242 - -0.5 4,697,242 - -0.6 4,697,242 - -0.9 4,697,242 - +0.1 4,697,294 + -0.7 4,697,352 + -0.3 4,697,352 + +1.3 4,697,352 + +0.9 4,697,353 - +0.6 4,697,353 - +2.4 4,697,353 - +0.3 4,697,353 - +0.1 4,697,355 + +0.1 4,697,355 + +0.1 4,697,355 + +0.6 4,697,355 + -0.1 4,697,355 + +0.4 4,697,355 + -0.9 4,697,355 + -1.0 4,697,355 + -0.1 4,697,356 - -0.3 4,697,356 - +0.1 4,697,356 - +0.4 4,697,356 - +0.2 4,697,356 - -0.2 4,697,356 - +0.0 4,697,356 - -0.3 4,697,364 - +0.0 4,697,364 - +0.4 4,697,473 + +0.0 4,697,473 + -1.4 4,697,473 + -0.6 4,697,473 + -0.3 4,697,473 + +0.5 4,697,473 + +0.3 4,697,474 - +0.3 4,697,474 - -0.2 4,697,474 - +0.4 4,697,474 - -1.1 4,697,474 - -0.0 4,697,474 - +0.5 4,697,557 + Xcc-8004.4942.1 0.20 -0.6 4,697,557 + Xcc-8004.4942.1 0.20 +0.9 4,697,557 + Xcc-8004.4942.1 0.20 +0.1 4,697,557 + Xcc-8004.4942.1 0.20 -0.7 4,697,557 + Xcc-8004.4942.1 0.20 -1.9 4,697,557 + Xcc-8004.4942.1 0.20 -1.2 4,697,557 + Xcc-8004.4942.1 0.20 -0.5 4,697,558 - Xcc-8004.4942.1 0.20 +1.0 4,697,558 - Xcc-8004.4942.1 0.20 -0.2 4,697,558 - Xcc-8004.4942.1 0.20 -1.5 4,697,617 + Xcc-8004.4942.1 0.29 +1.2 4,697,617 + Xcc-8004.4942.1 0.29 +0.8 4,697,617 + Xcc-8004.4942.1 0.29 -0.8 4,697,618 - Xcc-8004.4942.1 0.29 +0.8 4,697,618 - Xcc-8004.4942.1 0.29 -0.3 4,697,632 + Xcc-8004.4942.1 0.31 -2.0 4,697,632 + Xcc-8004.4942.1 0.31 +0.9 4,697,633 - Xcc-8004.4942.1 0.31 -1.0 4,697,633 - Xcc-8004.4942.1 0.31 -1.1 4,697,633 - Xcc-8004.4942.1 0.31 -0.2 4,697,633 - Xcc-8004.4942.1 0.31 +0.6 4,697,633 - Xcc-8004.4942.1 0.31 +0.7 4,697,633 - Xcc-8004.4942.1 0.31 -0.9 4,697,640 + Xcc-8004.4942.1 0.32 -0.1 4,697,716 + Xcc-8004.4942.1 0.44 -0.6 4,697,716 + Xcc-8004.4942.1 0.44 +0.4 4,697,716 + Xcc-8004.4942.1 0.44 -0.8 4,697,716 + Xcc-8004.4942.1 0.44 -1.8 4,697,716 + Xcc-8004.4942.1 0.44 -0.5 4,697,717 - Xcc-8004.4942.1 0.44 -0.6 4,697,717 - Xcc-8004.4942.1 0.44 +3.4 4,697,959 + Xcc-8004.4942.1 0.80 -0.5 4,697,959 + Xcc-8004.4942.1 0.80 -0.6 4,697,959 + Xcc-8004.4942.1 0.80 -1.4 4,697,959 + Xcc-8004.4942.1 0.80 +0.6 4,697,960 - Xcc-8004.4942.1 0.80 -0.2 4,697,960 - Xcc-8004.4942.1 0.80 -1.0 4,698,001 + Xcc-8004.4942.1 0.86 +0.5 4,698,001 + Xcc-8004.4942.1 0.86 -0.5 4,698,001 + Xcc-8004.4942.1 0.86 -1.2 4,698,002 - Xcc-8004.4942.1 0.87 -0.3 4,698,002 - Xcc-8004.4942.1 0.87 -0.7 4,698,052 + +0.4 4,698,052 + -0.4 4,698,052 + +0.0 4,698,052 + +2.4 4,698,052 + +0.2 4,698,052 + +1.2 4,698,052 + -0.4 4,698,053 - -1.1 4,698,053 - +1.4 4,698,053 - +0.4 4,698,053 - -0.1 4,698,053 - +0.9 4,698,053 - +0.5 4,698,053 - -0.0 4,698,064 + +0.0 4,698,064 + -1.0 4,698,064 + +1.1 4,698,064 + +0.8 4,698,065 - -0.3 4,698,065 - -1.7 4,698,396 - Xcc-8004.4944.1 0.26 -0.6 4,698,666 + Xcc-8004.4944.1 0.48 -0.7 4,698,666 + Xcc-8004.4944.1 0.48 -0.1 4,698,666 + Xcc-8004.4944.1 0.48 -0.0 4,698,667 - Xcc-8004.4944.1 0.48 +0.6 4,698,667 - Xcc-8004.4944.1 0.48 +0.5 4,698,667 - Xcc-8004.4944.1 0.48 +0.2 4,698,749 + Xcc-8004.4944.1 0.55 +1.0 4,698,750 - Xcc-8004.4944.1 0.55 -0.7 4,698,813 + Xcc-8004.4944.1 0.60 -0.3 4,698,850 + Xcc-8004.4944.1 0.63 +0.7 4,698,850 + Xcc-8004.4944.1 0.63 +0.1 4,698,850 + Xcc-8004.4944.1 0.63 -0.4 4,698,850 + Xcc-8004.4944.1 0.63 -0.6 4,698,850 + Xcc-8004.4944.1 0.63 -1.1 4,698,850 + Xcc-8004.4944.1 0.63 +0.1 4,698,851 - Xcc-8004.4944.1 0.63 +0.4 4,698,851 - Xcc-8004.4944.1 0.63 +0.5 4,698,851 - Xcc-8004.4944.1 0.63 +0.0
Or see this region's nucleotide sequence