Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4737.1

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4736.1 and Xcc-8004.4737.1 are separated by 28 nucleotidesXcc-8004.4737.1 and Xcc-8004.4738.1 are separated by 3 nucleotidesXcc-8004.4738.1 and Xcc-8004.4739.1 overlap by 16 nucleotides Xcc-8004.4736.1: Xcc-8004.4736.1 - Possibly related to ydbT, at 4,505,687 to 4,507,189 Xcc-8004.4736.1 Xcc-8004.4737.1: Xcc-8004.4737.1 - Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis, at 4,507,218 to 4,508,273 Xcc-8004.4737.1 Xcc-8004.4738.1: Xcc-8004.4738.1 - Lipopolysaccharide core biosynthesis glycosyl transferase, at 4,508,277 to 4,509,101 Xcc-8004.4738.1 Xcc-8004.4739.1: Xcc-8004.4739.1 - Lipid A core - O-antigen ligase and related enzymes, at 4,509,086 to 4,510,375 Xcc-8004.4739.1 Position (kb) 4507 4508 4509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.285 kb on - strand, within Xcc-8004.4736.1at 4506.285 kb on - strand, within Xcc-8004.4736.1at 4506.285 kb on - strand, within Xcc-8004.4736.1at 4506.344 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.535 kb on + strand, within Xcc-8004.4736.1at 4506.535 kb on + strand, within Xcc-8004.4736.1at 4506.536 kb on - strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.576 kb on - strand, within Xcc-8004.4736.1at 4506.576 kb on - strand, within Xcc-8004.4736.1at 4506.899 kb on + strand, within Xcc-8004.4736.1at 4506.899 kb on + strand, within Xcc-8004.4736.1at 4506.923 kb on + strand, within Xcc-8004.4736.1at 4506.941 kb on + strand, within Xcc-8004.4736.1at 4506.941 kb on + strand, within Xcc-8004.4736.1at 4506.941 kb on + strand, within Xcc-8004.4736.1at 4506.941 kb on + strand, within Xcc-8004.4736.1at 4506.941 kb on + strand, within Xcc-8004.4736.1at 4506.942 kb on - strand, within Xcc-8004.4736.1at 4506.942 kb on - strand, within Xcc-8004.4736.1at 4506.942 kb on - strand, within Xcc-8004.4736.1at 4506.942 kb on - strand, within Xcc-8004.4736.1at 4506.945 kb on + strand, within Xcc-8004.4736.1at 4506.946 kb on - strand, within Xcc-8004.4736.1at 4506.946 kb on - strand, within Xcc-8004.4736.1at 4507.241 kb on - strandat 4507.241 kb on - strandat 4507.702 kb on + strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.703 kb on - strand, within Xcc-8004.4737.1at 4507.741 kb on + strand, within Xcc-8004.4737.1at 4507.741 kb on + strand, within Xcc-8004.4737.1at 4507.741 kb on + strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.742 kb on - strand, within Xcc-8004.4737.1at 4507.958 kb on - strand, within Xcc-8004.4737.1at 4507.958 kb on - strand, within Xcc-8004.4737.1at 4507.958 kb on - strand, within Xcc-8004.4737.1at 4508.202 kb on + strandat 4508.202 kb on + strandat 4508.202 kb on + strandat 4508.203 kb on - strandat 4508.228 kb on + strandat 4508.229 kb on - strandat 4508.229 kb on - strandat 4508.263 kb on + strandat 4508.263 kb on + strandat 4508.264 kb on - strandat 4508.264 kb on - strandat 4508.264 kb on - strandat 4508.486 kb on + strand, within Xcc-8004.4738.1at 4508.646 kb on + strand, within Xcc-8004.4738.1at 4508.647 kb on - strand, within Xcc-8004.4738.1at 4508.808 kb on + strand, within Xcc-8004.4738.1at 4508.847 kb on + strand, within Xcc-8004.4738.1at 4508.943 kb on + strand, within Xcc-8004.4738.1at 4508.943 kb on + strand, within Xcc-8004.4738.1at 4508.944 kb on - strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.995 kb on - strand, within Xcc-8004.4738.1at 4508.995 kb on - strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.180 kb on + strandat 4509.237 kb on + strand, within Xcc-8004.4739.1at 4509.238 kb on - strand, within Xcc-8004.4739.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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4,506,284 + Xcc-8004.4736.1 0.40 -0.2
4,506,284 + Xcc-8004.4736.1 0.40 +0.2
4,506,284 + Xcc-8004.4736.1 0.40 -0.3
4,506,284 + Xcc-8004.4736.1 0.40 -0.9
4,506,284 + Xcc-8004.4736.1 0.40 -1.8
4,506,285 - Xcc-8004.4736.1 0.40 -0.4
4,506,285 - Xcc-8004.4736.1 0.40 -0.5
4,506,285 - Xcc-8004.4736.1 0.40 -0.6
4,506,344 + Xcc-8004.4736.1 0.44 -0.0
4,506,350 + Xcc-8004.4736.1 0.44 -0.4
4,506,350 + Xcc-8004.4736.1 0.44 -0.4
4,506,350 + Xcc-8004.4736.1 0.44 -1.3
4,506,350 + Xcc-8004.4736.1 0.44 +0.4
4,506,350 + Xcc-8004.4736.1 0.44 -0.4
4,506,350 + Xcc-8004.4736.1 0.44 +0.6
4,506,350 + Xcc-8004.4736.1 0.44 -0.2
4,506,350 + Xcc-8004.4736.1 0.44 -0.8
4,506,351 - Xcc-8004.4736.1 0.44 -0.6
4,506,351 - Xcc-8004.4736.1 0.44 -1.0
4,506,351 - Xcc-8004.4736.1 0.44 +0.9
4,506,351 - Xcc-8004.4736.1 0.44 -0.1
4,506,351 - Xcc-8004.4736.1 0.44 +1.8
4,506,351 - Xcc-8004.4736.1 0.44 -0.9
4,506,464 + Xcc-8004.4736.1 0.52 +0.0
4,506,464 + Xcc-8004.4736.1 0.52 -1.0
4,506,464 + Xcc-8004.4736.1 0.52 -0.1
4,506,464 + Xcc-8004.4736.1 0.52 +0.9
4,506,464 + Xcc-8004.4736.1 0.52 -1.7
4,506,465 - Xcc-8004.4736.1 0.52 -0.4
4,506,465 - Xcc-8004.4736.1 0.52 +1.2
4,506,465 - Xcc-8004.4736.1 0.52 -0.0
4,506,465 - Xcc-8004.4736.1 0.52 +0.2
4,506,535 + Xcc-8004.4736.1 0.56 +1.2
4,506,535 + Xcc-8004.4736.1 0.56 -1.0
4,506,536 - Xcc-8004.4736.1 0.56 +0.1
4,506,575 + Xcc-8004.4736.1 0.59 -0.4
4,506,575 + Xcc-8004.4736.1 0.59 +0.4
4,506,575 + Xcc-8004.4736.1 0.59 +1.4
4,506,575 + Xcc-8004.4736.1 0.59 -0.5
4,506,576 - Xcc-8004.4736.1 0.59 +0.2
4,506,576 - Xcc-8004.4736.1 0.59 +0.3
4,506,899 + Xcc-8004.4736.1 0.81 +0.3
4,506,899 + Xcc-8004.4736.1 0.81 -0.4
4,506,923 + Xcc-8004.4736.1 0.82 -0.7
4,506,941 + Xcc-8004.4736.1 0.83 +0.7
4,506,941 + Xcc-8004.4736.1 0.83 -0.2
4,506,941 + Xcc-8004.4736.1 0.83 -0.8
4,506,941 + Xcc-8004.4736.1 0.83 -0.2
4,506,941 + Xcc-8004.4736.1 0.83 -0.1
4,506,942 - Xcc-8004.4736.1 0.83 -0.8
4,506,942 - Xcc-8004.4736.1 0.83 -0.8
4,506,942 - Xcc-8004.4736.1 0.83 +0.1
4,506,942 - Xcc-8004.4736.1 0.83 -0.0
4,506,945 + Xcc-8004.4736.1 0.84 +0.0
4,506,946 - Xcc-8004.4736.1 0.84 -0.3
4,506,946 - Xcc-8004.4736.1 0.84 +0.1
4,507,241 - -0.2
4,507,241 - -1.1
4,507,702 + Xcc-8004.4737.1 0.46 -0.7
4,507,703 - Xcc-8004.4737.1 0.46 -1.2
4,507,703 - Xcc-8004.4737.1 0.46 -0.7
4,507,703 - Xcc-8004.4737.1 0.46 -1.3
4,507,703 - Xcc-8004.4737.1 0.46 -2.6
4,507,741 + Xcc-8004.4737.1 0.50 -0.5
4,507,741 + Xcc-8004.4737.1 0.50 -3.9
4,507,741 + Xcc-8004.4737.1 0.50 +0.1
4,507,742 - Xcc-8004.4737.1 0.50 -2.2
4,507,742 - Xcc-8004.4737.1 0.50 -0.5
4,507,742 - Xcc-8004.4737.1 0.50 +0.4
4,507,742 - Xcc-8004.4737.1 0.50 -0.2
4,507,742 - Xcc-8004.4737.1 0.50 -2.1
4,507,958 - Xcc-8004.4737.1 0.70 -1.0
4,507,958 - Xcc-8004.4737.1 0.70 -1.6
4,507,958 - Xcc-8004.4737.1 0.70 -1.3
4,508,202 + -1.6
4,508,202 + -1.4
4,508,202 + +0.1
4,508,203 - -1.6
4,508,228 + +0.6
4,508,229 - -1.0
4,508,229 - -1.9
4,508,263 + -2.6
4,508,263 + -3.1
4,508,264 - +0.2
4,508,264 - -0.1
4,508,264 - -0.2
4,508,486 + Xcc-8004.4738.1 0.25 -1.8
4,508,646 + Xcc-8004.4738.1 0.45 -0.8
4,508,647 - Xcc-8004.4738.1 0.45 -0.8
4,508,808 + Xcc-8004.4738.1 0.64 -1.6
4,508,847 + Xcc-8004.4738.1 0.69 -1.4
4,508,943 + Xcc-8004.4738.1 0.81 -2.5
4,508,943 + Xcc-8004.4738.1 0.81 -1.0
4,508,944 - Xcc-8004.4738.1 0.81 -2.0
4,508,988 + Xcc-8004.4738.1 0.86 -2.0
4,508,988 + Xcc-8004.4738.1 0.86 +1.4
4,508,988 + Xcc-8004.4738.1 0.86 -2.5
4,508,989 - Xcc-8004.4738.1 0.86 -3.1
4,508,989 - Xcc-8004.4738.1 0.86 -1.2
4,508,989 - Xcc-8004.4738.1 0.86 -0.4
4,508,995 - Xcc-8004.4738.1 0.87 -3.9
4,508,995 - Xcc-8004.4738.1 0.87 -1.2
4,508,998 + Xcc-8004.4738.1 0.87 -0.3
4,508,998 + Xcc-8004.4738.1 0.87 -2.2
4,508,998 + Xcc-8004.4738.1 0.87 -0.3
4,508,998 + Xcc-8004.4738.1 0.87 -3.1
4,508,998 + Xcc-8004.4738.1 0.87 -2.5
4,508,998 + Xcc-8004.4738.1 0.87 -1.0
4,508,998 + Xcc-8004.4738.1 0.87 -0.2
4,508,998 + Xcc-8004.4738.1 0.87 -1.1
4,508,998 + Xcc-8004.4738.1 0.87 -3.0
4,508,998 + Xcc-8004.4738.1 0.87 -2.6
4,508,999 - Xcc-8004.4738.1 0.88 -0.3
4,508,999 - Xcc-8004.4738.1 0.88 -0.2
4,508,999 - Xcc-8004.4738.1 0.88 -0.2
4,508,999 - Xcc-8004.4738.1 0.88 -3.3
4,508,999 - Xcc-8004.4738.1 0.88 -0.4
4,508,999 - Xcc-8004.4738.1 0.88 -3.7
4,508,999 - Xcc-8004.4738.1 0.88 -0.8
4,508,999 - Xcc-8004.4738.1 0.88 -1.5
4,508,999 - Xcc-8004.4738.1 0.88 -0.8
4,508,999 - Xcc-8004.4738.1 0.88 -0.6
4,508,999 - Xcc-8004.4738.1 0.88 +0.1
4,508,999 - Xcc-8004.4738.1 0.88 -2.0
4,508,999 - Xcc-8004.4738.1 0.88 -1.0
4,508,999 - Xcc-8004.4738.1 0.88 -1.4
4,508,999 - Xcc-8004.4738.1 0.88 -1.1
4,508,999 - Xcc-8004.4738.1 0.88 -1.3
4,509,009 + Xcc-8004.4738.1 0.89 -0.2
4,509,009 + Xcc-8004.4738.1 0.89 -2.0
4,509,009 + Xcc-8004.4738.1 0.89 -1.4
4,509,009 + Xcc-8004.4738.1 0.89 -2.0
4,509,009 + Xcc-8004.4738.1 0.89 -2.7
4,509,009 + Xcc-8004.4738.1 0.89 -2.4
4,509,009 + Xcc-8004.4738.1 0.89 -1.5
4,509,009 + Xcc-8004.4738.1 0.89 -2.6
4,509,009 + Xcc-8004.4738.1 0.89 -0.8
4,509,009 + Xcc-8004.4738.1 0.89 -0.3
4,509,009 + Xcc-8004.4738.1 0.89 -1.7
4,509,009 + Xcc-8004.4738.1 0.89 -0.6
4,509,010 - Xcc-8004.4738.1 0.89 -2.9
4,509,010 - Xcc-8004.4738.1 0.89 +0.0
4,509,010 - Xcc-8004.4738.1 0.89 -1.9
4,509,010 - Xcc-8004.4738.1 0.89 -2.7
4,509,010 - Xcc-8004.4738.1 0.89 -2.3
4,509,010 - Xcc-8004.4738.1 0.89 -2.6
4,509,010 - Xcc-8004.4738.1 0.89 +0.8
4,509,010 - Xcc-8004.4738.1 0.89 -1.8
4,509,010 - Xcc-8004.4738.1 0.89 -0.7
4,509,010 - Xcc-8004.4738.1 0.89 -2.4
4,509,010 - Xcc-8004.4738.1 0.89 -1.0
4,509,010 - Xcc-8004.4738.1 0.89 -2.4
4,509,010 - Xcc-8004.4738.1 0.89 -1.4
4,509,180 + -1.5
4,509,237 + Xcc-8004.4739.1 0.12 -1.1
4,509,238 - Xcc-8004.4739.1 0.12 +0.6

Or see this region's nucleotide sequence