Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0773

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0771 and Synpcc7942_0772 are separated by 129 nucleotidesSynpcc7942_0772 and ycf52 are separated by 14 nucleotidesycf52 and Synpcc7942_0774 are separated by 18 nucleotides Synpcc7942_0771: Synpcc7942_0771 - hypothetical protein, at 763,640 to 764,854 _0771 Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577 _0772 Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197 ycf52 Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103 _0774 Position (kb) 765 766 767Strain fitness (log2 ratio) -3 -2 -1 0 1at 764.600 kb on - strand, within Synpcc7942_0771at 764.613 kb on + strand, within Synpcc7942_0771at 764.615 kb on + strand, within Synpcc7942_0771at 764.622 kb on + strand, within Synpcc7942_0771at 764.659 kb on + strand, within Synpcc7942_0771at 764.665 kb on + strand, within Synpcc7942_0771at 764.665 kb on + strand, within Synpcc7942_0771at 764.673 kb on - strand, within Synpcc7942_0771at 764.677 kb on + strand, within Synpcc7942_0771at 764.678 kb on - strand, within Synpcc7942_0771at 764.678 kb on - strand, within Synpcc7942_0771at 764.714 kb on + strand, within Synpcc7942_0771at 764.719 kb on + strand, within Synpcc7942_0771at 764.719 kb on + strand, within Synpcc7942_0771at 764.720 kb on - strand, within Synpcc7942_0771at 764.727 kb on - strandat 764.739 kb on - strandat 764.754 kb on - strandat 764.755 kb on + strandat 764.755 kb on + strandat 764.755 kb on + strandat 764.755 kb on + strandat 764.755 kb on + strandat 764.755 kb on + strandat 764.763 kb on - strandat 764.763 kb on - strandat 764.763 kb on - strandat 764.763 kb on - strandat 764.765 kb on + strandat 764.773 kb on - strandat 764.824 kb on + strandat 764.829 kb on + strandat 764.895 kb on + strandat 764.902 kb on + strandat 764.908 kb on - strandat 764.910 kb on - strandat 764.942 kb on + strandat 764.950 kb on - strandat 764.950 kb on - strandat 764.983 kb on - strandat 765.003 kb on - strandat 765.020 kb on + strandat 765.022 kb on + strandat 765.028 kb on - strandat 765.094 kb on + strand, within Synpcc7942_0772at 765.114 kb on + strand, within Synpcc7942_0772at 765.114 kb on - strand, within Synpcc7942_0772at 765.128 kb on + strand, within Synpcc7942_0772at 765.153 kb on - strand, within Synpcc7942_0772at 765.167 kb on - strand, within Synpcc7942_0772at 765.295 kb on + strand, within Synpcc7942_0772at 765.308 kb on - strand, within Synpcc7942_0772at 765.310 kb on - strand, within Synpcc7942_0772at 765.338 kb on - strand, within Synpcc7942_0772at 765.338 kb on - strand, within Synpcc7942_0772at 765.355 kb on - strand, within Synpcc7942_0772at 765.377 kb on + strand, within Synpcc7942_0772at 765.390 kb on + strand, within Synpcc7942_0772at 765.390 kb on + strand, within Synpcc7942_0772at 765.414 kb on + strand, within Synpcc7942_0772at 765.420 kb on - strand, within Synpcc7942_0772at 765.422 kb on - strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.424 kb on + strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.432 kb on - strand, within Synpcc7942_0772at 765.435 kb on + strand, within Synpcc7942_0772at 765.436 kb on + strand, within Synpcc7942_0772at 765.456 kb on + strand, within Synpcc7942_0772at 765.464 kb on - strand, within Synpcc7942_0772at 765.521 kb on + strandat 765.523 kb on - strandat 765.535 kb on + strandat 765.542 kb on + strandat 765.542 kb on + strandat 765.542 kb on + strandat 765.547 kb on + strandat 765.550 kb on - strandat 765.550 kb on - strandat 765.552 kb on + strandat 765.553 kb on - strandat 765.579 kb on - strandat 765.581 kb on - strandat 765.687 kb on + strand, within ycf52at 765.701 kb on + strand, within ycf52at 765.748 kb on + strand, within ycf52at 765.762 kb on - strand, within ycf52at 765.786 kb on - strand, within ycf52at 765.813 kb on + strand, within ycf52at 765.850 kb on + strand, within ycf52at 765.856 kb on + strand, within ycf52at 765.919 kb on + strand, within ycf52at 765.952 kb on - strand, within ycf52at 765.952 kb on - strand, within ycf52at 766.014 kb on - strand, within ycf52at 766.048 kb on - strand, within ycf52at 766.085 kb on - strand, within ycf52at 766.092 kb on - strand, within ycf52at 766.100 kb on + strand, within ycf52at 766.101 kb on - strand, within ycf52at 766.113 kb on - strand, within ycf52at 766.143 kb on - strandat 766.154 kb on + strandat 766.154 kb on + strandat 766.162 kb on - strandat 766.182 kb on - strandat 766.186 kb on - strandat 766.221 kb on - strandat 766.248 kb on - strandat 766.250 kb on + strandat 766.258 kb on - strandat 766.272 kb on - strandat 766.310 kb on + strand, within Synpcc7942_0774at 766.322 kb on + strand, within Synpcc7942_0774at 766.322 kb on + strand, within Synpcc7942_0774at 766.339 kb on + strand, within Synpcc7942_0774at 766.354 kb on - strand, within Synpcc7942_0774at 766.375 kb on - strand, within Synpcc7942_0774at 766.375 kb on - strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.379 kb on + strand, within Synpcc7942_0774at 766.387 kb on - strand, within Synpcc7942_0774at 766.387 kb on - strand, within Synpcc7942_0774at 766.402 kb on - strand, within Synpcc7942_0774at 766.402 kb on - strand, within Synpcc7942_0774at 766.415 kb on + strand, within Synpcc7942_0774at 766.418 kb on - strand, within Synpcc7942_0774at 766.423 kb on - strand, within Synpcc7942_0774at 766.423 kb on - strand, within Synpcc7942_0774at 766.436 kb on - strand, within Synpcc7942_0774at 766.473 kb on - strand, within Synpcc7942_0774at 766.482 kb on - strand, within Synpcc7942_0774at 766.509 kb on + strand, within Synpcc7942_0774at 766.523 kb on + strand, within Synpcc7942_0774at 766.535 kb on + strand, within Synpcc7942_0774at 766.535 kb on + strand, within Synpcc7942_0774at 766.540 kb on + strand, within Synpcc7942_0774at 766.543 kb on - strand, within Synpcc7942_0774at 766.543 kb on - strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.545 kb on + strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.553 kb on - strand, within Synpcc7942_0774at 766.585 kb on - strand, within Synpcc7942_0774at 766.604 kb on - strandat 766.631 kb on + strand, within Synpcc7942_0774at 766.803 kb on + strand, within Synpcc7942_0774at 766.806 kb on - strand, within Synpcc7942_0774at 766.824 kb on + strand, within Synpcc7942_0774at 766.903 kb on - strandat 766.921 kb on + strand, within Synpcc7942_0774at 766.923 kb on - strand, within Synpcc7942_0774at 766.972 kb on - strand, within Synpcc7942_0774at 766.975 kb on + strand, within Synpcc7942_0774at 766.983 kb on - strand, within Synpcc7942_0774at 767.012 kb on + strand, within Synpcc7942_0774at 767.032 kb on + strandat 767.065 kb on + strandat 767.068 kb on - strandat 767.073 kb on - strandat 767.073 kb on - strandat 767.097 kb on + strandat 767.105 kb on - strandat 767.107 kb on + strandat 767.128 kb on + strandat 767.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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764,600 - Synpcc7942_0771 0.79 -1.1
764,613 + Synpcc7942_0771 0.80 -2.0
764,615 + Synpcc7942_0771 0.80 +0.4
764,622 + Synpcc7942_0771 0.81 +0.2
764,659 + Synpcc7942_0771 0.84 +0.7
764,665 + Synpcc7942_0771 0.84 -0.4
764,665 + Synpcc7942_0771 0.84 -0.8
764,673 - Synpcc7942_0771 0.85 -1.6
764,677 + Synpcc7942_0771 0.85 +0.9
764,678 - Synpcc7942_0771 0.85 -0.9
764,678 - Synpcc7942_0771 0.85 -0.3
764,714 + Synpcc7942_0771 0.88 -0.7
764,719 + Synpcc7942_0771 0.89 -0.1
764,719 + Synpcc7942_0771 0.89 -0.4
764,720 - Synpcc7942_0771 0.89 -0.3
764,727 - +0.1
764,739 - -0.1
764,754 - -0.4
764,755 + +0.3
764,755 + -0.6
764,755 + +0.3
764,755 + -0.1
764,755 + -0.7
764,755 + -0.3
764,763 - +0.2
764,763 - -1.3
764,763 - +1.4
764,763 - +0.2
764,765 + +1.0
764,773 - -1.0
764,824 + +0.2
764,829 + -0.1
764,895 + +0.4
764,902 + -2.0
764,908 - +1.2
764,910 - -0.9
764,942 + -0.5
764,950 - +1.1
764,950 - +1.2
764,983 - +0.2
765,003 - -0.7
765,020 + -0.5
765,022 + +0.3
765,028 - -0.7
765,094 + Synpcc7942_0772 0.19 +0.5
765,114 + Synpcc7942_0772 0.22 +0.7
765,114 - Synpcc7942_0772 0.22 +0.5
765,128 + Synpcc7942_0772 0.24 +0.6
765,153 - Synpcc7942_0772 0.28 -0.3
765,167 - Synpcc7942_0772 0.31 -0.7
765,295 + Synpcc7942_0772 0.52 -0.9
765,308 - Synpcc7942_0772 0.55 +0.3
765,310 - Synpcc7942_0772 0.55 -0.7
765,338 - Synpcc7942_0772 0.60 -0.3
765,338 - Synpcc7942_0772 0.60 -0.4
765,355 - Synpcc7942_0772 0.62 +0.9
765,377 + Synpcc7942_0772 0.66 +0.0
765,390 + Synpcc7942_0772 0.68 -0.0
765,390 + Synpcc7942_0772 0.68 +0.1
765,414 + Synpcc7942_0772 0.72 -2.0
765,420 - Synpcc7942_0772 0.73 -0.4
765,422 - Synpcc7942_0772 0.74 -0.7
765,424 + Synpcc7942_0772 0.74 -1.0
765,424 + Synpcc7942_0772 0.74 -0.0
765,424 + Synpcc7942_0772 0.74 -1.5
765,424 + Synpcc7942_0772 0.74 -0.6
765,424 + Synpcc7942_0772 0.74 -0.5
765,424 + Synpcc7942_0772 0.74 +0.1
765,424 + Synpcc7942_0772 0.74 +0.2
765,432 - Synpcc7942_0772 0.75 -0.1
765,432 - Synpcc7942_0772 0.75 +0.1
765,432 - Synpcc7942_0772 0.75 +0.3
765,432 - Synpcc7942_0772 0.75 -0.9
765,432 - Synpcc7942_0772 0.75 +1.4
765,432 - Synpcc7942_0772 0.75 +1.2
765,435 + Synpcc7942_0772 0.76 +0.9
765,436 + Synpcc7942_0772 0.76 -1.5
765,456 + Synpcc7942_0772 0.79 -1.0
765,464 - Synpcc7942_0772 0.81 -0.0
765,521 + +0.0
765,523 - +0.8
765,535 + -0.4
765,542 + +0.0
765,542 + -1.1
765,542 + +0.1
765,547 + -0.6
765,550 - +0.3
765,550 - -0.0
765,552 + -1.4
765,553 - -0.9
765,579 - +1.3
765,581 - -0.4
765,687 + ycf52 Synpcc7942_0773 0.16 -1.2
765,701 + ycf52 Synpcc7942_0773 0.18 -1.9
765,748 + ycf52 Synpcc7942_0773 0.26 -1.2
765,762 - ycf52 Synpcc7942_0773 0.28 -2.8
765,786 - ycf52 Synpcc7942_0773 0.32 -2.4
765,813 + ycf52 Synpcc7942_0773 0.36 -1.4
765,850 + ycf52 Synpcc7942_0773 0.43 -1.6
765,856 + ycf52 Synpcc7942_0773 0.44 -1.4
765,919 + ycf52 Synpcc7942_0773 0.54 -3.0
765,952 - ycf52 Synpcc7942_0773 0.59 -2.5
765,952 - ycf52 Synpcc7942_0773 0.59 -0.7
766,014 - ycf52 Synpcc7942_0773 0.70 -0.7
766,048 - ycf52 Synpcc7942_0773 0.75 -1.1
766,085 - ycf52 Synpcc7942_0773 0.81 -1.0
766,092 - ycf52 Synpcc7942_0773 0.83 -2.0
766,100 + ycf52 Synpcc7942_0773 0.84 -0.4
766,101 - ycf52 Synpcc7942_0773 0.84 -1.0
766,113 - ycf52 Synpcc7942_0773 0.86 -1.2
766,143 - +0.1
766,154 + +0.5
766,154 + +0.6
766,162 - -0.3
766,182 - +0.1
766,186 - +0.6
766,221 - -0.8
766,248 - -1.8
766,250 + -1.1
766,258 - -0.0
766,272 - -0.1
766,310 + Synpcc7942_0774 0.11 +0.3
766,322 + Synpcc7942_0774 0.12 -1.6
766,322 + Synpcc7942_0774 0.12 -0.3
766,339 + Synpcc7942_0774 0.14 -1.5
766,354 - Synpcc7942_0774 0.16 -0.9
766,375 - Synpcc7942_0774 0.18 +0.2
766,375 - Synpcc7942_0774 0.18 +1.0
766,379 + Synpcc7942_0774 0.18 -1.8
766,379 + Synpcc7942_0774 0.18 -0.0
766,379 + Synpcc7942_0774 0.18 -0.6
766,379 + Synpcc7942_0774 0.18 -0.7
766,387 - Synpcc7942_0774 0.19 -0.1
766,387 - Synpcc7942_0774 0.19 -0.8
766,402 - Synpcc7942_0774 0.21 -2.6
766,402 - Synpcc7942_0774 0.21 -0.7
766,415 + Synpcc7942_0774 0.22 +1.4
766,418 - Synpcc7942_0774 0.23 +0.1
766,423 - Synpcc7942_0774 0.23 -1.9
766,423 - Synpcc7942_0774 0.23 -1.2
766,436 - Synpcc7942_0774 0.25 -1.6
766,473 - Synpcc7942_0774 0.29 -0.3
766,482 - Synpcc7942_0774 0.30 +0.4
766,509 + Synpcc7942_0774 0.33 +0.0
766,523 + Synpcc7942_0774 0.35 -0.1
766,535 + Synpcc7942_0774 0.36 +0.9
766,535 + Synpcc7942_0774 0.36 -1.6
766,540 + Synpcc7942_0774 0.36 -0.3
766,543 - Synpcc7942_0774 0.37 -1.0
766,543 - Synpcc7942_0774 0.37 +0.4
766,545 + Synpcc7942_0774 0.37 -0.3
766,545 + Synpcc7942_0774 0.37 -0.1
766,545 + Synpcc7942_0774 0.37 -0.4
766,545 + Synpcc7942_0774 0.37 -2.0
766,545 + Synpcc7942_0774 0.37 +0.2
766,553 - Synpcc7942_0774 0.38 -0.6
766,553 - Synpcc7942_0774 0.38 +1.6
766,553 - Synpcc7942_0774 0.38 +0.4
766,553 - Synpcc7942_0774 0.38 -0.6
766,585 - Synpcc7942_0774 0.42 -1.2
766,604 - +0.4
766,631 + Synpcc7942_0774 0.47 -0.4
766,803 + Synpcc7942_0774 0.66 +0.0
766,806 - Synpcc7942_0774 0.66 +0.4
766,824 + Synpcc7942_0774 0.68 +0.2
766,903 - +1.7
766,921 + Synpcc7942_0774 0.79 -1.4
766,923 - Synpcc7942_0774 0.80 +0.4
766,972 - Synpcc7942_0774 0.85 -0.6
766,975 + Synpcc7942_0774 0.85 -1.4
766,983 - Synpcc7942_0774 0.86 +0.2
767,012 + Synpcc7942_0774 0.90 +0.9
767,032 + +0.3
767,065 + -0.4
767,068 - +0.4
767,073 - +1.0
767,073 - -0.8
767,097 + -0.2
767,105 - +0.6
767,107 + -1.6
767,128 + -0.4
767,155 + +1.1

Or see this region's nucleotide sequence