Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0706

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntact and Synpcc7942_0705 overlap by 14 nucleotidesSynpcc7942_0705 and cobL are separated by 6 nucleotidescobL and cad overlap by 20 nucleotides Synpcc7942_0704: act - Chloramphenicol O-acetyltransferase, at 695,313 to 695,948 act Synpcc7942_0705: Synpcc7942_0705 - hypothetical protein, at 695,935 to 696,570 _0705 Synpcc7942_0706: cobL - precorrin-6B methylase, at 696,577 to 697,191 cobL Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641 cad Position (kb) 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1at 695.835 kb on + strand, within actat 696.145 kb on + strand, within Synpcc7942_0705at 696.164 kb on + strand, within Synpcc7942_0705at 696.209 kb on - strand, within Synpcc7942_0705at 696.213 kb on + strand, within Synpcc7942_0705at 696.301 kb on - strand, within Synpcc7942_0705at 696.371 kb on - strand, within Synpcc7942_0705at 696.387 kb on + strand, within Synpcc7942_0705at 696.397 kb on + strand, within Synpcc7942_0705at 696.397 kb on + strand, within Synpcc7942_0705at 696.403 kb on - strand, within Synpcc7942_0705at 696.464 kb on + strand, within Synpcc7942_0705at 696.464 kb on - strand, within Synpcc7942_0705at 696.466 kb on + strand, within Synpcc7942_0705at 696.474 kb on - strand, within Synpcc7942_0705at 696.474 kb on - strandat 696.474 kb on - strand, within Synpcc7942_0705at 696.719 kb on + strand, within cobLat 696.722 kb on + strand, within cobLat 696.722 kb on + strand, within cobLat 696.724 kb on + strand, within cobLat 696.748 kb on + strand, within cobLat 696.756 kb on - strand, within cobLat 696.756 kb on - strand, within cobLat 696.770 kb on + strand, within cobLat 696.799 kb on - strand, within cobLat 696.799 kb on - strand, within cobLat 696.837 kb on + strand, within cobLat 696.845 kb on - strand, within cobLat 696.866 kb on - strand, within cobLat 696.888 kb on - strand, within cobLat 696.896 kb on + strand, within cobLat 696.923 kb on - strand, within cobLat 696.926 kb on + strand, within cobLat 696.930 kb on + strand, within cobLat 696.955 kb on - strand, within cobLat 696.983 kb on + strand, within cobLat 696.983 kb on + strand, within cobLat 697.040 kb on + strand, within cobLat 697.040 kb on - strand, within cobLat 697.055 kb on - strand, within cobLat 697.135 kb on - strandat 697.144 kb on + strandat 697.154 kb on + strandat 697.159 kb on + strandat 697.162 kb on - strandat 697.162 kb on - strandat 697.178 kb on - strandat 697.180 kb on + strandat 697.180 kb on + strandat 697.183 kb on - strandat 697.187 kb on + strandat 697.188 kb on - strandat 697.198 kb on + strandat 697.205 kb on + strandat 697.205 kb on + strandat 697.213 kb on - strandat 697.226 kb on + strandat 697.349 kb on + strandat 697.395 kb on - strand, within cadat 697.432 kb on + strand, within cadat 697.500 kb on - strand, within cadat 697.502 kb on - strand, within cadat 697.517 kb on + strand, within cadat 697.519 kb on - strand, within cadat 697.529 kb on - strand, within cadat 697.583 kb on - strand, within cadat 697.678 kb on + strand, within cadat 697.720 kb on + strand, within cadat 697.744 kb on - strand, within cadat 697.828 kb on + strand, within cadat 697.878 kb on - strand, within cadat 697.909 kb on + strand, within cadat 697.914 kb on + strand, within cadat 697.922 kb on - strand, within cadat 697.945 kb on - strand, within cadat 698.042 kb on + strand, within cadat 698.124 kb on + strand, within cad

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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695,835 + act Synpcc7942_0704 0.82 -0.2
696,145 + Synpcc7942_0705 0.33 +0.2
696,164 + Synpcc7942_0705 0.36 +1.4
696,209 - Synpcc7942_0705 0.43 +0.6
696,213 + Synpcc7942_0705 0.44 +1.1
696,301 - Synpcc7942_0705 0.58 -2.7
696,371 - Synpcc7942_0705 0.69 -0.5
696,387 + Synpcc7942_0705 0.71 -1.5
696,397 + Synpcc7942_0705 0.73 -2.2
696,397 + Synpcc7942_0705 0.73 +0.6
696,403 - Synpcc7942_0705 0.74 -0.4
696,464 + Synpcc7942_0705 0.83 -0.3
696,464 - Synpcc7942_0705 0.83 +0.4
696,466 + Synpcc7942_0705 0.83 -0.7
696,474 - Synpcc7942_0705 0.85 +1.2
696,474 - +0.6
696,474 - Synpcc7942_0705 0.85 +0.1
696,719 + cobL Synpcc7942_0706 0.23 +0.1
696,722 + cobL Synpcc7942_0706 0.24 -1.1
696,722 + cobL Synpcc7942_0706 0.24 -1.5
696,724 + cobL Synpcc7942_0706 0.24 -0.7
696,748 + cobL Synpcc7942_0706 0.28 -3.3
696,756 - cobL Synpcc7942_0706 0.29 -3.4
696,756 - cobL Synpcc7942_0706 0.29 -2.4
696,770 + cobL Synpcc7942_0706 0.31 -1.3
696,799 - cobL Synpcc7942_0706 0.36 -3.1
696,799 - cobL Synpcc7942_0706 0.36 -2.0
696,837 + cobL Synpcc7942_0706 0.42 -2.9
696,845 - cobL Synpcc7942_0706 0.44 -2.0
696,866 - cobL Synpcc7942_0706 0.47 -2.0
696,888 - cobL Synpcc7942_0706 0.51 -1.5
696,896 + cobL Synpcc7942_0706 0.52 -3.4
696,923 - cobL Synpcc7942_0706 0.56 -1.3
696,926 + cobL Synpcc7942_0706 0.57 -0.5
696,930 + cobL Synpcc7942_0706 0.57 -2.0
696,955 - cobL Synpcc7942_0706 0.61 -0.9
696,983 + cobL Synpcc7942_0706 0.66 -1.9
696,983 + cobL Synpcc7942_0706 0.66 -2.3
697,040 + cobL Synpcc7942_0706 0.75 -1.1
697,040 - cobL Synpcc7942_0706 0.75 -1.8
697,055 - cobL Synpcc7942_0706 0.78 -2.8
697,135 - -2.1
697,144 + -1.3
697,154 + -2.2
697,159 + -0.0
697,162 - -1.6
697,162 - -2.0
697,178 - -0.8
697,180 + -0.4
697,180 + -1.5
697,183 - +0.1
697,187 + +0.7
697,188 - -1.6
697,198 + +0.7
697,205 + -0.9
697,205 + -2.0
697,213 - -0.2
697,226 + -2.0
697,349 + -0.7
697,395 - cad Synpcc7942_0707 0.15 -2.9
697,432 + cad Synpcc7942_0707 0.18 -1.2
697,500 - cad Synpcc7942_0707 0.22 -0.6
697,502 - cad Synpcc7942_0707 0.22 -0.9
697,517 + cad Synpcc7942_0707 0.23 +0.5
697,519 - cad Synpcc7942_0707 0.24 -2.3
697,529 - cad Synpcc7942_0707 0.24 -1.4
697,583 - cad Synpcc7942_0707 0.28 -0.3
697,678 + cad Synpcc7942_0707 0.34 -2.2
697,720 + cad Synpcc7942_0707 0.37 -2.8
697,744 - cad Synpcc7942_0707 0.39 -2.0
697,828 + cad Synpcc7942_0707 0.45 -0.9
697,878 - cad Synpcc7942_0707 0.48 -3.6
697,909 + cad Synpcc7942_0707 0.50 -1.6
697,914 + cad Synpcc7942_0707 0.50 -0.8
697,922 - cad Synpcc7942_0707 0.51 -0.3
697,945 - cad Synpcc7942_0707 0.53 -1.1
698,042 + cad Synpcc7942_0707 0.59 +0.0
698,124 + cad Synpcc7942_0707 0.65 -0.2

Or see this region's nucleotide sequence