Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0619

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntahcY and Synpcc7942_0619 are separated by 52 nucleotidesSynpcc7942_0619 and Synpcc7942_0620 are separated by 77 nucleotidesSynpcc7942_0620 and Synpcc7942_0621 are separated by 144 nucleotides Synpcc7942_0618: ahcY - S-adenosyl-L-homocysteine hydrolase, at 607,820 to 609,100 ahcY Synpcc7942_0619: Synpcc7942_0619 - hypothetical protein, at 609,153 to 609,788 _0619 Synpcc7942_0620: Synpcc7942_0620 - hypothetical protein, at 609,866 to 610,570 _0620 Synpcc7942_0621: Synpcc7942_0621 - hypothetical protein, at 610,715 to 611,893 _0621 Position (kb) 609 610Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 609.081 kb on + strandat 609.087 kb on - strandat 609.094 kb on + strandat 609.094 kb on + strandat 609.094 kb on + strandat 609.102 kb on - strandat 609.102 kb on - strandat 609.104 kb on - strandat 609.104 kb on - strandat 609.117 kb on + strandat 609.117 kb on + strandat 609.117 kb on + strandat 609.125 kb on - strandat 609.125 kb on - strandat 609.125 kb on - strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.192 kb on - strandat 609.192 kb on - strandat 609.197 kb on + strandat 609.199 kb on - strandat 609.217 kb on - strand, within Synpcc7942_0619at 609.222 kb on - strand, within Synpcc7942_0619at 609.244 kb on + strand, within Synpcc7942_0619at 609.254 kb on + strand, within Synpcc7942_0619at 609.262 kb on - strand, within Synpcc7942_0619at 609.262 kb on - strand, within Synpcc7942_0619at 609.282 kb on + strand, within Synpcc7942_0619at 609.282 kb on + strand, within Synpcc7942_0619at 609.282 kb on + strand, within Synpcc7942_0619at 609.290 kb on - strand, within Synpcc7942_0619at 609.297 kb on + strand, within Synpcc7942_0619at 609.305 kb on - strand, within Synpcc7942_0619at 609.331 kb on + strand, within Synpcc7942_0619at 609.344 kb on + strand, within Synpcc7942_0619at 609.344 kb on + strand, within Synpcc7942_0619at 609.408 kb on - strand, within Synpcc7942_0619at 609.408 kb on - strand, within Synpcc7942_0619at 609.433 kb on + strand, within Synpcc7942_0619at 609.463 kb on + strand, within Synpcc7942_0619at 609.471 kb on - strand, within Synpcc7942_0619at 609.606 kb on - strand, within Synpcc7942_0619at 609.660 kb on + strand, within Synpcc7942_0619at 609.665 kb on - strand, within Synpcc7942_0619at 609.667 kb on + strand, within Synpcc7942_0619at 609.699 kb on - strand, within Synpcc7942_0619at 609.701 kb on + strand, within Synpcc7942_0619at 609.701 kb on + strand, within Synpcc7942_0619at 609.709 kb on + strand, within Synpcc7942_0619at 609.710 kb on - strandat 609.724 kb on + strand, within Synpcc7942_0619at 609.732 kb on - strandat 609.736 kb on + strandat 609.783 kb on + strandat 609.790 kb on - strandat 609.791 kb on - strandat 609.846 kb on - strandat 609.863 kb on - strandat 609.873 kb on - strandat 609.907 kb on - strandat 609.930 kb on - strandat 609.976 kb on + strand, within Synpcc7942_0620at 609.983 kb on - strand, within Synpcc7942_0620at 609.988 kb on - strand, within Synpcc7942_0620at 610.073 kb on - strandat 610.096 kb on + strand, within Synpcc7942_0620at 610.135 kb on - strand, within Synpcc7942_0620at 610.149 kb on + strand, within Synpcc7942_0620at 610.198 kb on + strand, within Synpcc7942_0620at 610.198 kb on + strand, within Synpcc7942_0620at 610.209 kb on + strand, within Synpcc7942_0620at 610.234 kb on + strand, within Synpcc7942_0620at 610.245 kb on - strand, within Synpcc7942_0620at 610.267 kb on + strand, within Synpcc7942_0620at 610.273 kb on + strand, within Synpcc7942_0620at 610.326 kb on - strand, within Synpcc7942_0620at 610.326 kb on - strand, within Synpcc7942_0620at 610.342 kb on - strand, within Synpcc7942_0620at 610.346 kb on + strand, within Synpcc7942_0620at 610.354 kb on - strand, within Synpcc7942_0620at 610.354 kb on - strand, within Synpcc7942_0620at 610.371 kb on - strand, within Synpcc7942_0620at 610.401 kb on + strand, within Synpcc7942_0620at 610.401 kb on + strand, within Synpcc7942_0620at 610.409 kb on - strand, within Synpcc7942_0620at 610.409 kb on - strand, within Synpcc7942_0620at 610.409 kb on - strand, within Synpcc7942_0620at 610.423 kb on + strand, within Synpcc7942_0620at 610.423 kb on - strand, within Synpcc7942_0620at 610.446 kb on + strand, within Synpcc7942_0620at 610.456 kb on + strand, within Synpcc7942_0620at 610.456 kb on + strand, within Synpcc7942_0620at 610.456 kb on + strand, within Synpcc7942_0620at 610.463 kb on - strand, within Synpcc7942_0620at 610.464 kb on - strand, within Synpcc7942_0620at 610.464 kb on - strand, within Synpcc7942_0620at 610.469 kb on - strand, within Synpcc7942_0620at 610.477 kb on - strand, within Synpcc7942_0620at 610.531 kb on + strandat 610.539 kb on - strandat 610.572 kb on - strandat 610.587 kb on + strandat 610.587 kb on + strandat 610.606 kb on - strandat 610.606 kb on - strandat 610.611 kb on + strandat 610.617 kb on + strandat 610.621 kb on + strandat 610.629 kb on - strandat 610.644 kb on + strandat 610.644 kb on + strandat 610.652 kb on - strandat 610.652 kb on - strandat 610.658 kb on + strandat 610.666 kb on - strandat 610.668 kb on + strandat 610.677 kb on - strandat 610.720 kb on - strandat 610.743 kb on + strandat 610.762 kb on - strandat 610.773 kb on + strandat 610.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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609,081 + -2.4
609,087 - -2.8
609,094 + -0.5
609,094 + -1.9
609,094 + -0.4
609,102 - -3.4
609,102 - +0.0
609,104 - -1.2
609,104 - +0.2
609,117 + -2.6
609,117 + -4.8
609,117 + -3.1
609,125 - +0.3
609,125 - -0.9
609,125 - -0.2
609,184 + -3.2
609,184 + -0.4
609,192 - -1.3
609,192 - -2.0
609,197 + -1.2
609,199 - -1.9
609,217 - Synpcc7942_0619 0.10 -2.9
609,222 - Synpcc7942_0619 0.11 -2.3
609,244 + Synpcc7942_0619 0.14 -2.5
609,254 + Synpcc7942_0619 0.16 -2.9
609,262 - Synpcc7942_0619 0.17 -0.9
609,262 - Synpcc7942_0619 0.17 -3.1
609,282 + Synpcc7942_0619 0.20 -2.3
609,282 + Synpcc7942_0619 0.20 -3.7
609,282 + Synpcc7942_0619 0.20 -2.0
609,290 - Synpcc7942_0619 0.22 -2.3
609,297 + Synpcc7942_0619 0.23 -2.9
609,305 - Synpcc7942_0619 0.24 -2.3
609,331 + Synpcc7942_0619 0.28 -3.5
609,344 + Synpcc7942_0619 0.30 -1.7
609,344 + Synpcc7942_0619 0.30 -1.7
609,408 - Synpcc7942_0619 0.40 -2.5
609,408 - Synpcc7942_0619 0.40 -0.8
609,433 + Synpcc7942_0619 0.44 -2.5
609,463 + Synpcc7942_0619 0.49 -1.3
609,471 - Synpcc7942_0619 0.50 -6.5
609,606 - Synpcc7942_0619 0.71 -0.6
609,660 + Synpcc7942_0619 0.80 -1.0
609,665 - Synpcc7942_0619 0.81 -3.7
609,667 + Synpcc7942_0619 0.81 -3.0
609,699 - Synpcc7942_0619 0.86 -4.6
609,701 + Synpcc7942_0619 0.86 -1.2
609,701 + Synpcc7942_0619 0.86 -1.7
609,709 + Synpcc7942_0619 0.87 -2.4
609,710 - +0.4
609,724 + Synpcc7942_0619 0.90 -1.2
609,732 - -2.1
609,736 + -1.0
609,783 + -0.6
609,790 - -0.9
609,791 - -0.3
609,846 - +0.6
609,863 - -0.8
609,873 - -1.4
609,907 - -0.7
609,930 - +0.1
609,976 + Synpcc7942_0620 0.16 -1.0
609,983 - Synpcc7942_0620 0.17 -0.1
609,988 - Synpcc7942_0620 0.17 +1.2
610,073 - +0.8
610,096 + Synpcc7942_0620 0.33 +0.1
610,135 - Synpcc7942_0620 0.38 -0.7
610,149 + Synpcc7942_0620 0.40 -1.2
610,198 + Synpcc7942_0620 0.47 -0.5
610,198 + Synpcc7942_0620 0.47 -1.0
610,209 + Synpcc7942_0620 0.49 -0.7
610,234 + Synpcc7942_0620 0.52 -0.4
610,245 - Synpcc7942_0620 0.54 -0.6
610,267 + Synpcc7942_0620 0.57 +0.6
610,273 + Synpcc7942_0620 0.58 -0.5
610,326 - Synpcc7942_0620 0.65 +0.2
610,326 - Synpcc7942_0620 0.65 +0.2
610,342 - Synpcc7942_0620 0.68 +0.4
610,346 + Synpcc7942_0620 0.68 -0.0
610,354 - Synpcc7942_0620 0.69 -1.1
610,354 - Synpcc7942_0620 0.69 -0.6
610,371 - Synpcc7942_0620 0.72 -0.5
610,401 + Synpcc7942_0620 0.76 +0.4
610,401 + Synpcc7942_0620 0.76 +0.1
610,409 - Synpcc7942_0620 0.77 +0.2
610,409 - Synpcc7942_0620 0.77 -0.6
610,409 - Synpcc7942_0620 0.77 +2.3
610,423 + Synpcc7942_0620 0.79 -0.9
610,423 - Synpcc7942_0620 0.79 -1.4
610,446 + Synpcc7942_0620 0.82 +0.5
610,456 + Synpcc7942_0620 0.84 +0.4
610,456 + Synpcc7942_0620 0.84 +0.3
610,456 + Synpcc7942_0620 0.84 -0.2
610,463 - Synpcc7942_0620 0.85 -0.7
610,464 - Synpcc7942_0620 0.85 -0.8
610,464 - Synpcc7942_0620 0.85 +0.9
610,469 - Synpcc7942_0620 0.86 -1.1
610,477 - Synpcc7942_0620 0.87 -0.3
610,531 + -0.3
610,539 - -0.8
610,572 - -0.3
610,587 + +0.6
610,587 + +0.6
610,606 - +1.6
610,606 - -0.3
610,611 + -0.0
610,617 + -0.7
610,621 + +1.5
610,629 - +0.5
610,644 + +1.2
610,644 + -1.2
610,652 - +0.2
610,652 - +0.9
610,658 + +0.5
610,666 - -0.1
610,668 + -0.0
610,677 - +1.3
610,720 - +0.2
610,743 + +0.5
610,762 - +1.0
610,773 + +0.2
610,781 - +0.7

Or see this region's nucleotide sequence