Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltA and sixA are separated by 134 nucleotides sixA and Synpcc7942_0614 are separated by 3 nucleotides Synpcc7942_0614 and Synpcc7942_0615 are separated by 160 nucleotides Synpcc7942_0615 and hrcA are separated by 57 nucleotides
Synpcc7942_0612: gltA - methylcitrate synthase, at 602,209 to 603,369
gltA
Synpcc7942_0613: sixA - phosphohistidine phosphatase, SixA, at 603,504 to 603,992
sixA
Synpcc7942_0614: Synpcc7942_0614 - hypothetical protein, at 603,996 to 605,675
_0614
Synpcc7942_0615: Synpcc7942_0615 - Rhodanese-like, at 605,836 to 606,180
_0615
Synpcc7942_0616: hrcA - heat-inducible transcription repressor, at 606,238 to 607,299
hrcA
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.455 kb on - strand at 603.490 kb on + strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.529 kb on + strand at 603.569 kb on - strand, within sixA at 603.583 kb on - strand, within sixA at 603.603 kb on - strand, within sixA at 603.603 kb on - strand, within sixA at 603.615 kb on + strand, within sixA at 603.615 kb on + strand, within sixA at 603.615 kb on + strand, within sixA at 603.618 kb on - strand, within sixA at 603.623 kb on - strand, within sixA at 603.623 kb on - strand, within sixA at 603.641 kb on + strand, within sixA at 603.661 kb on - strand, within sixA at 603.661 kb on - strand, within sixA at 603.661 kb on - strand, within sixA at 603.687 kb on + strand, within sixA at 603.687 kb on + strand, within sixA at 603.732 kb on + strand, within sixA at 603.780 kb on + strand, within sixA at 603.825 kb on + strand, within sixA at 603.828 kb on - strand, within sixA at 603.838 kb on + strand, within sixA at 603.845 kb on - strand, within sixA at 603.850 kb on + strand, within sixA at 603.905 kb on + strand, within sixA at 603.913 kb on + strand, within sixA at 603.994 kb on + strand at 604.037 kb on - strand at 604.052 kb on - strand at 604.544 kb on - strand, within Synpcc7942_0614 at 604.686 kb on + strand, within Synpcc7942_0614 at 605.126 kb on + strand at 605.140 kb on + strand, within Synpcc7942_0614 at 605.720 kb on - strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.789 kb on - strand at 605.806 kb on - strand at 605.811 kb on + strand at 605.819 kb on - strand at 605.832 kb on + strand at 605.840 kb on - strand at 605.840 kb on - strand at 605.860 kb on + strand at 605.867 kb on + strand at 605.875 kb on - strand, within Synpcc7942_0615 at 605.885 kb on - strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.912 kb on + strand, within Synpcc7942_0615 at 605.960 kb on + strand, within Synpcc7942_0615 at 605.974 kb on + strand, within Synpcc7942_0615 at 605.982 kb on - strand, within Synpcc7942_0615 at 605.993 kb on + strand, within Synpcc7942_0615 at 606.016 kb on + strand, within Synpcc7942_0615 at 606.024 kb on - strand, within Synpcc7942_0615 at 606.078 kb on - strand, within Synpcc7942_0615 at 606.100 kb on + strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.109 kb on - strand, within Synpcc7942_0615 at 606.112 kb on + strand, within Synpcc7942_0615 at 606.113 kb on + strand, within Synpcc7942_0615 at 606.166 kb on + strand at 606.173 kb on - strand at 606.174 kb on + strand at 606.209 kb on - strand at 606.213 kb on - strand at 606.232 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.326 kb on - strand at 606.331 kb on - strand at 606.331 kb on - strand at 606.342 kb on + strand at 606.357 kb on + strand, within hrcA at 606.382 kb on + strand, within hrcA at 606.383 kb on - strand, within hrcA at 606.390 kb on - strand, within hrcA at 606.399 kb on - strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.454 kb on - strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.491 kb on - strand, within hrcA at 606.497 kb on - strand, within hrcA at 606.502 kb on + strand, within hrcA at 606.510 kb on - strand, within hrcA at 606.517 kb on + strand, within hrcA at 606.530 kb on + strand, within hrcA at 606.538 kb on - strand, within hrcA at 606.563 kb on + strand, within hrcA at 606.565 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.583 kb on + strand, within hrcA at 606.591 kb on - strand, within hrcA at 606.669 kb on - strand, within hrcA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 603,455 - +0.6 603,490 + +0.6 603,510 - -0.8 603,510 - +1.4 603,510 - +0.7 603,510 - +1.0 603,529 + -0.9 603,569 - sixA Synpcc7942_0613 0.13 +0.2 603,583 - sixA Synpcc7942_0613 0.16 -0.7 603,603 - sixA Synpcc7942_0613 0.20 -0.5 603,603 - sixA Synpcc7942_0613 0.20 -0.5 603,615 + sixA Synpcc7942_0613 0.23 +1.2 603,615 + sixA Synpcc7942_0613 0.23 +1.4 603,615 + sixA Synpcc7942_0613 0.23 -0.1 603,618 - sixA Synpcc7942_0613 0.23 -0.1 603,623 - sixA Synpcc7942_0613 0.24 +1.7 603,623 - sixA Synpcc7942_0613 0.24 +0.5 603,641 + sixA Synpcc7942_0613 0.28 +0.2 603,661 - sixA Synpcc7942_0613 0.32 -0.2 603,661 - sixA Synpcc7942_0613 0.32 -0.3 603,661 - sixA Synpcc7942_0613 0.32 +0.6 603,687 + sixA Synpcc7942_0613 0.37 +0.1 603,687 + sixA Synpcc7942_0613 0.37 -0.5 603,732 + sixA Synpcc7942_0613 0.47 -0.7 603,780 + sixA Synpcc7942_0613 0.56 +0.4 603,825 + sixA Synpcc7942_0613 0.66 -0.1 603,828 - sixA Synpcc7942_0613 0.66 -0.5 603,838 + sixA Synpcc7942_0613 0.68 -0.2 603,845 - sixA Synpcc7942_0613 0.70 +0.1 603,850 + sixA Synpcc7942_0613 0.71 -0.0 603,905 + sixA Synpcc7942_0613 0.82 -0.2 603,913 + sixA Synpcc7942_0613 0.84 -0.4 603,994 + -0.3 604,037 - -2.0 604,052 - +0.9 604,544 - Synpcc7942_0614 0.33 -0.8 604,686 + Synpcc7942_0614 0.41 -0.6 605,126 + +1.8 605,140 + Synpcc7942_0614 0.68 -1.8 605,720 - +0.7 605,781 + -1.2 605,781 + +0.8 605,781 + -1.2 605,781 + -0.0 605,789 - -1.1 605,806 - +0.7 605,811 + +0.3 605,819 - +0.4 605,832 + +0.7 605,840 - -2.1 605,840 - +1.1 605,860 + +0.2 605,867 + -0.7 605,875 - Synpcc7942_0615 0.11 +0.8 605,885 - Synpcc7942_0615 0.14 -1.2 605,887 + Synpcc7942_0615 0.15 -1.7 605,887 + Synpcc7942_0615 0.15 -0.8 605,887 + Synpcc7942_0615 0.15 -0.8 605,887 + Synpcc7942_0615 0.15 -0.4 605,912 + Synpcc7942_0615 0.22 +0.3 605,960 + Synpcc7942_0615 0.36 -0.5 605,974 + Synpcc7942_0615 0.40 +0.2 605,982 - Synpcc7942_0615 0.42 +0.1 605,993 + Synpcc7942_0615 0.46 -0.6 606,016 + Synpcc7942_0615 0.52 +0.4 606,024 - Synpcc7942_0615 0.54 +0.4 606,078 - Synpcc7942_0615 0.70 -0.0 606,100 + Synpcc7942_0615 0.77 -0.6 606,102 - Synpcc7942_0615 0.77 +0.7 606,102 - Synpcc7942_0615 0.77 +0.0 606,102 - Synpcc7942_0615 0.77 +0.8 606,109 - Synpcc7942_0615 0.79 -0.2 606,112 + Synpcc7942_0615 0.80 -0.4 606,113 + Synpcc7942_0615 0.80 +0.3 606,166 + -0.4 606,173 - -0.5 606,174 + +0.4 606,209 - -0.5 606,213 - -1.7 606,232 + -0.5 606,323 + -0.2 606,323 + -0.6 606,323 + -1.3 606,323 + +0.4 606,326 - +0.3 606,331 - +1.4 606,331 - -1.6 606,342 + -0.3 606,357 + hrcA Synpcc7942_0616 0.11 +1.3 606,382 + hrcA Synpcc7942_0616 0.14 +0.2 606,383 - hrcA Synpcc7942_0616 0.14 -0.3 606,390 - hrcA Synpcc7942_0616 0.14 +1.0 606,399 - hrcA Synpcc7942_0616 0.15 -0.2 606,406 + hrcA Synpcc7942_0616 0.16 +0.1 606,406 + hrcA Synpcc7942_0616 0.16 +0.2 606,454 - hrcA Synpcc7942_0616 0.20 -0.9 606,465 + hrcA Synpcc7942_0616 0.21 +0.1 606,465 + hrcA Synpcc7942_0616 0.21 +1.3 606,491 - hrcA Synpcc7942_0616 0.24 -1.9 606,497 - hrcA Synpcc7942_0616 0.24 -0.3 606,502 + hrcA Synpcc7942_0616 0.25 -0.0 606,510 - hrcA Synpcc7942_0616 0.26 -1.8 606,517 + hrcA Synpcc7942_0616 0.26 +0.9 606,530 + hrcA Synpcc7942_0616 0.27 +0.7 606,538 - hrcA Synpcc7942_0616 0.28 -0.4 606,563 + hrcA Synpcc7942_0616 0.31 -0.3 606,565 + hrcA Synpcc7942_0616 0.31 +0.1 606,573 + hrcA Synpcc7942_0616 0.32 +0.7 606,573 + hrcA Synpcc7942_0616 0.32 -1.4 606,583 + hrcA Synpcc7942_0616 0.32 -0.3 606,591 - hrcA Synpcc7942_0616 0.33 +1.4 606,669 - hrcA Synpcc7942_0616 0.41 +0.6
Or see this region's nucleotide sequence