Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0428

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntscpB and Synpcc7942_0427 are separated by 16 nucleotidesSynpcc7942_0427 and leuA are separated by 30 nucleotidesleuA and Synpcc7942_0429 are separated by 70 nucleotidesSynpcc7942_0429 and dxs are separated by 161 nucleotides Synpcc7942_0426: scpB - condensin subunit ScpB, at 415,535 to 416,086 scpB Synpcc7942_0427: Synpcc7942_0427 - ATPase, at 416,103 to 416,951 _0427 Synpcc7942_0428: leuA - putative alpha-isopropylmalate/homocitrate synthase family transferase, at 416,982 to 418,610 leuA Synpcc7942_0429: Synpcc7942_0429 - hypothetical protein, at 418,681 to 419,220 _0429 Synpcc7942_0430: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 419,382 to 421,292 dxs Position (kb) 416 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.995 kb on + strand, within scpBat 416.003 kb on - strand, within scpBat 416.023 kb on + strand, within scpBat 416.023 kb on + strand, within scpBat 416.023 kb on + strand, within scpBat 416.023 kb on + strand, within scpBat 416.023 kb on + strand, within scpBat 416.023 kb on + strand, within scpBat 416.031 kb on - strandat 416.031 kb on - strandat 416.031 kb on - strandat 416.031 kb on - strandat 416.031 kb on - strandat 416.031 kb on - strandat 416.031 kb on - strandat 416.031 kb on - strandat 416.045 kb on - strandat 416.045 kb on - strandat 416.051 kb on - strandat 416.082 kb on - strandat 416.102 kb on - strandat 416.142 kb on - strandat 416.171 kb on - strandat 416.171 kb on - strandat 416.176 kb on - strandat 416.176 kb on - strandat 416.199 kb on + strand, within Synpcc7942_0427at 416.201 kb on + strand, within Synpcc7942_0427at 416.235 kb on + strand, within Synpcc7942_0427at 416.237 kb on - strand, within Synpcc7942_0427at 416.261 kb on + strand, within Synpcc7942_0427at 416.262 kb on + strand, within Synpcc7942_0427at 416.270 kb on - strand, within Synpcc7942_0427at 416.326 kb on - strand, within Synpcc7942_0427at 416.374 kb on - strand, within Synpcc7942_0427at 416.376 kb on - strand, within Synpcc7942_0427at 416.385 kb on + strand, within Synpcc7942_0427at 416.483 kb on + strand, within Synpcc7942_0427at 416.517 kb on + strand, within Synpcc7942_0427at 416.590 kb on - strand, within Synpcc7942_0427at 416.657 kb on + strand, within Synpcc7942_0427at 416.708 kb on + strand, within Synpcc7942_0427at 416.753 kb on + strand, within Synpcc7942_0427at 416.760 kb on + strand, within Synpcc7942_0427at 416.788 kb on + strand, within Synpcc7942_0427at 416.793 kb on + strand, within Synpcc7942_0427at 416.793 kb on + strand, within Synpcc7942_0427at 416.798 kb on + strand, within Synpcc7942_0427at 416.798 kb on + strand, within Synpcc7942_0427at 416.798 kb on + strand, within Synpcc7942_0427at 416.801 kb on - strand, within Synpcc7942_0427at 416.806 kb on - strand, within Synpcc7942_0427at 416.810 kb on + strand, within Synpcc7942_0427at 416.859 kb on - strand, within Synpcc7942_0427at 416.876 kb on + strandat 416.884 kb on - strandat 416.947 kb on + strandat 416.965 kb on - strandat 417.189 kb on - strand, within leuAat 417.218 kb on + strand, within leuAat 417.489 kb on + strand, within leuAat 417.533 kb on + strand, within leuAat 417.997 kb on - strand, within leuAat 418.095 kb on - strand, within leuAat 418.166 kb on - strand, within leuAat 418.439 kb on + strand, within leuAat 418.623 kb on + strandat 418.636 kb on + strandat 418.647 kb on + strandat 418.678 kb on + strandat 418.686 kb on - strandat 418.745 kb on - strand, within Synpcc7942_0429at 418.747 kb on - strand, within Synpcc7942_0429at 418.747 kb on - strand, within Synpcc7942_0429at 418.764 kb on - strand, within Synpcc7942_0429at 418.810 kb on + strand, within Synpcc7942_0429at 418.818 kb on - strand, within Synpcc7942_0429at 418.833 kb on + strand, within Synpcc7942_0429at 418.863 kb on + strand, within Synpcc7942_0429at 418.863 kb on + strand, within Synpcc7942_0429at 418.870 kb on + strand, within Synpcc7942_0429at 418.870 kb on - strand, within Synpcc7942_0429at 418.901 kb on + strand, within Synpcc7942_0429at 418.911 kb on + strand, within Synpcc7942_0429at 418.948 kb on + strand, within Synpcc7942_0429at 418.949 kb on + strand, within Synpcc7942_0429at 419.001 kb on + strand, within Synpcc7942_0429at 419.022 kb on - strand, within Synpcc7942_0429at 419.027 kb on - strand, within Synpcc7942_0429at 419.078 kb on + strand, within Synpcc7942_0429at 419.092 kb on - strand, within Synpcc7942_0429at 419.092 kb on - strand, within Synpcc7942_0429at 419.094 kb on + strand, within Synpcc7942_0429at 419.094 kb on + strand, within Synpcc7942_0429at 419.094 kb on + strand, within Synpcc7942_0429at 419.094 kb on + strand, within Synpcc7942_0429at 419.102 kb on - strand, within Synpcc7942_0429at 419.102 kb on - strand, within Synpcc7942_0429at 419.102 kb on - strand, within Synpcc7942_0429at 419.142 kb on + strand, within Synpcc7942_0429at 419.156 kb on + strand, within Synpcc7942_0429at 419.158 kb on - strand, within Synpcc7942_0429at 419.160 kb on + strand, within Synpcc7942_0429at 419.160 kb on - strand, within Synpcc7942_0429at 419.209 kb on - strandat 419.235 kb on + strandat 419.280 kb on + strandat 419.300 kb on + strandat 419.300 kb on + strandat 419.328 kb on + strandat 419.330 kb on + strandat 419.332 kb on - strandat 419.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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415,995 + scpB Synpcc7942_0426 0.83 -0.3
416,003 - scpB Synpcc7942_0426 0.85 -0.6
416,023 + scpB Synpcc7942_0426 0.88 -1.3
416,023 + scpB Synpcc7942_0426 0.88 -0.1
416,023 + scpB Synpcc7942_0426 0.88 -1.4
416,023 + scpB Synpcc7942_0426 0.88 -1.9
416,023 + scpB Synpcc7942_0426 0.88 -0.1
416,023 + scpB Synpcc7942_0426 0.88 +0.2
416,031 - -1.6
416,031 - +0.7
416,031 - -1.2
416,031 - -0.9
416,031 - -0.6
416,031 - -1.0
416,031 - +0.9
416,031 - -0.3
416,045 - -0.7
416,045 - -1.8
416,051 - -0.9
416,082 - +0.5
416,102 - -1.0
416,142 - -0.4
416,171 - -0.5
416,171 - -0.5
416,176 - +0.7
416,176 - -0.4
416,199 + Synpcc7942_0427 0.11 -0.0
416,201 + Synpcc7942_0427 0.12 -0.5
416,235 + Synpcc7942_0427 0.16 -0.7
416,237 - Synpcc7942_0427 0.16 +0.1
416,261 + Synpcc7942_0427 0.19 +0.6
416,262 + Synpcc7942_0427 0.19 -0.1
416,270 - Synpcc7942_0427 0.20 -0.4
416,326 - Synpcc7942_0427 0.26 -0.1
416,374 - Synpcc7942_0427 0.32 -0.2
416,376 - Synpcc7942_0427 0.32 +0.4
416,385 + Synpcc7942_0427 0.33 -0.0
416,483 + Synpcc7942_0427 0.45 -0.0
416,517 + Synpcc7942_0427 0.49 +0.3
416,590 - Synpcc7942_0427 0.57 +0.5
416,657 + Synpcc7942_0427 0.65 -0.6
416,708 + Synpcc7942_0427 0.71 -1.1
416,753 + Synpcc7942_0427 0.77 -0.0
416,760 + Synpcc7942_0427 0.77 +2.1
416,788 + Synpcc7942_0427 0.81 -0.1
416,793 + Synpcc7942_0427 0.81 +0.2
416,793 + Synpcc7942_0427 0.81 -0.6
416,798 + Synpcc7942_0427 0.82 -0.3
416,798 + Synpcc7942_0427 0.82 +0.4
416,798 + Synpcc7942_0427 0.82 -1.2
416,801 - Synpcc7942_0427 0.82 +0.1
416,806 - Synpcc7942_0427 0.83 -0.1
416,810 + Synpcc7942_0427 0.83 +0.2
416,859 - Synpcc7942_0427 0.89 -0.3
416,876 + -0.1
416,884 - -0.2
416,947 + -0.9
416,965 - -0.5
417,189 - leuA Synpcc7942_0428 0.13 -2.8
417,218 + leuA Synpcc7942_0428 0.14 -0.7
417,489 + leuA Synpcc7942_0428 0.31 -0.9
417,533 + leuA Synpcc7942_0428 0.34 -0.4
417,997 - leuA Synpcc7942_0428 0.62 +0.6
418,095 - leuA Synpcc7942_0428 0.68 -1.6
418,166 - leuA Synpcc7942_0428 0.73 -0.7
418,439 + leuA Synpcc7942_0428 0.89 -1.3
418,623 + -0.6
418,636 + -1.7
418,647 + -0.6
418,678 + +0.7
418,686 - +0.2
418,745 - Synpcc7942_0429 0.12 +1.0
418,747 - Synpcc7942_0429 0.12 -0.1
418,747 - Synpcc7942_0429 0.12 -0.3
418,764 - Synpcc7942_0429 0.15 -0.8
418,810 + Synpcc7942_0429 0.24 +0.0
418,818 - Synpcc7942_0429 0.25 +0.2
418,833 + Synpcc7942_0429 0.28 +0.0
418,863 + Synpcc7942_0429 0.34 -1.0
418,863 + Synpcc7942_0429 0.34 +1.6
418,870 + Synpcc7942_0429 0.35 -1.0
418,870 - Synpcc7942_0429 0.35 -0.1
418,901 + Synpcc7942_0429 0.41 -0.7
418,911 + Synpcc7942_0429 0.43 +1.3
418,948 + Synpcc7942_0429 0.49 -0.2
418,949 + Synpcc7942_0429 0.50 -0.5
419,001 + Synpcc7942_0429 0.59 +1.1
419,022 - Synpcc7942_0429 0.63 +0.4
419,027 - Synpcc7942_0429 0.64 -0.9
419,078 + Synpcc7942_0429 0.74 -0.4
419,092 - Synpcc7942_0429 0.76 +0.5
419,092 - Synpcc7942_0429 0.76 +0.0
419,094 + Synpcc7942_0429 0.76 +0.0
419,094 + Synpcc7942_0429 0.76 +0.8
419,094 + Synpcc7942_0429 0.76 +0.7
419,094 + Synpcc7942_0429 0.76 -0.7
419,102 - Synpcc7942_0429 0.78 +0.5
419,102 - Synpcc7942_0429 0.78 -0.6
419,102 - Synpcc7942_0429 0.78 -0.2
419,142 + Synpcc7942_0429 0.85 +0.2
419,156 + Synpcc7942_0429 0.88 +2.1
419,158 - Synpcc7942_0429 0.88 -2.5
419,160 + Synpcc7942_0429 0.89 -0.1
419,160 - Synpcc7942_0429 0.89 -1.6
419,209 - +1.2
419,235 + -0.8
419,280 + +0.0
419,300 + -0.3
419,300 + -0.1
419,328 + +0.1
419,330 + -0.7
419,332 - -2.3
419,384 - -1.7

Or see this region's nucleotide sequence