Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0417 and Synpcc7942_0418 are separated by 134 nucleotides Synpcc7942_0418 and bioB are separated by 96 nucleotides
Synpcc7942_0417: Synpcc7942_0417 - ATPase, at 406,851 to 408,359
_0417
Synpcc7942_0418: Synpcc7942_0418 - hypothetical protein, at 408,494 to 408,844
_0418
Synpcc7942_0419: bioB - biotin synthase, at 408,941 to 409,903
bioB
Position (kb) 408
409 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 407.556 kb on + strand at 407.612 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.657 kb on - strand, within Synpcc7942_0417 at 407.732 kb on + strand at 407.733 kb on + strand, within Synpcc7942_0417 at 407.740 kb on - strand, within Synpcc7942_0417 at 407.740 kb on - strand, within Synpcc7942_0417 at 407.756 kb on - strand, within Synpcc7942_0417 at 407.756 kb on - strand at 407.777 kb on - strand, within Synpcc7942_0417 at 407.850 kb on + strand, within Synpcc7942_0417 at 408.004 kb on + strand, within Synpcc7942_0417 at 408.101 kb on + strand, within Synpcc7942_0417 at 408.108 kb on - strand, within Synpcc7942_0417 at 408.179 kb on + strand, within Synpcc7942_0417 at 408.190 kb on + strand, within Synpcc7942_0417 at 408.213 kb on - strand at 408.223 kb on - strand at 408.262 kb on - strand at 408.303 kb on - strand at 408.318 kb on + strand at 408.388 kb on - strand at 408.394 kb on + strand at 408.404 kb on + strand at 408.456 kb on - strand at 408.497 kb on + strand at 408.504 kb on + strand at 408.504 kb on + strand at 408.504 kb on + strand at 408.541 kb on + strand, within Synpcc7942_0418 at 408.567 kb on + strand, within Synpcc7942_0418 at 408.601 kb on - strand, within Synpcc7942_0418 at 408.656 kb on + strand, within Synpcc7942_0418 at 408.687 kb on + strand, within Synpcc7942_0418 at 408.706 kb on + strand at 408.714 kb on - strand, within Synpcc7942_0418 at 408.714 kb on - strand, within Synpcc7942_0418 at 408.714 kb on - strand, within Synpcc7942_0418 at 408.806 kb on + strand, within Synpcc7942_0418 at 408.806 kb on + strand, within Synpcc7942_0418 at 408.814 kb on - strand at 408.814 kb on - strand at 408.844 kb on + strand at 408.844 kb on + strand at 408.881 kb on - strand at 408.881 kb on - strand at 408.881 kb on - strand at 408.908 kb on - strand at 408.938 kb on + strand at 408.942 kb on - strand at 408.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 407,556 + +0.4 407,612 + Synpcc7942_0417 0.50 -3.3 407,624 + Synpcc7942_0417 0.51 -2.2 407,624 + Synpcc7942_0417 0.51 -2.1 407,624 + Synpcc7942_0417 0.51 -1.9 407,657 - Synpcc7942_0417 0.53 -1.2 407,732 + -0.1 407,733 + Synpcc7942_0417 0.58 -1.6 407,740 - Synpcc7942_0417 0.59 -3.1 407,740 - Synpcc7942_0417 0.59 -1.5 407,756 - Synpcc7942_0417 0.60 -2.1 407,756 - +1.4 407,777 - Synpcc7942_0417 0.61 -2.6 407,850 + Synpcc7942_0417 0.66 -1.5 408,004 + Synpcc7942_0417 0.76 -1.9 408,101 + Synpcc7942_0417 0.83 -1.3 408,108 - Synpcc7942_0417 0.83 -2.3 408,179 + Synpcc7942_0417 0.88 -0.7 408,190 + Synpcc7942_0417 0.89 +0.1 408,213 - -2.3 408,223 - -1.3 408,262 - +0.4 408,303 - -2.4 408,318 + -2.0 408,388 - -2.1 408,394 + -3.9 408,404 + -2.5 408,456 - -2.2 408,497 + -2.1 408,504 + -1.3 408,504 + -1.3 408,504 + -2.3 408,541 + Synpcc7942_0418 0.13 -1.5 408,567 + Synpcc7942_0418 0.21 -2.3 408,601 - Synpcc7942_0418 0.30 -3.7 408,656 + Synpcc7942_0418 0.46 -1.8 408,687 + Synpcc7942_0418 0.55 -2.4 408,706 + +0.4 408,714 - Synpcc7942_0418 0.63 -1.7 408,714 - Synpcc7942_0418 0.63 -1.3 408,714 - Synpcc7942_0418 0.63 -2.7 408,806 + Synpcc7942_0418 0.89 -1.1 408,806 + Synpcc7942_0418 0.89 -2.0 408,814 - -3.6 408,814 - -1.8 408,844 + +0.1 408,844 + -1.6 408,881 - +0.1 408,881 - -1.9 408,881 - -2.3 408,908 - -0.1 408,938 + +0.5 408,942 - +0.0 408,953 - -2.8
Or see this region's nucleotide sequence