Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bgtA and Synpcc7942_0250 are separated by 2 nucleotides Synpcc7942_0250 and Synpcc7942_0251 are separated by 3 nucleotides Synpcc7942_0251 and cp12 are separated by 28 nucleotides cp12 and Synpcc7942_0253 are separated by 34 nucleotides Synpcc7942_0253 and gyrA are separated by 229 nucleotides
Synpcc7942_0249: bgtA - ATPase, at 245,851 to 246,636
bgtA
Synpcc7942_0250: Synpcc7942_0250 - hypothetical protein, at 246,639 to 247,106
_0250
Synpcc7942_0251: Synpcc7942_0251 - Exonuclease, at 247,110 to 247,880
_0251
Synpcc7942_0252: cp12 - hypothetical protein, at 247,909 to 248,136
cp12
Synpcc7942_0253: Synpcc7942_0253 - hypothetical protein, at 248,171 to 248,629
_0253
Synpcc7942_0254: gyrA - DNA gyrase subunit A, at 248,859 to 251,429
gyrA
Position (kb) 247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 246.157 kb on + strand, within bgtA at 246.176 kb on - strand, within bgtA at 246.176 kb on - strand, within bgtA at 246.193 kb on - strand, within bgtA at 246.201 kb on - strand, within bgtA at 246.204 kb on - strand, within bgtA at 246.239 kb on - strand, within bgtA at 246.271 kb on + strand, within bgtA at 246.287 kb on + strand, within bgtA at 246.287 kb on + strand, within bgtA at 246.290 kb on + strand, within bgtA at 246.290 kb on + strand, within bgtA at 246.290 kb on + strand, within bgtA at 246.298 kb on - strand, within bgtA at 246.321 kb on + strand, within bgtA at 246.360 kb on + strand, within bgtA at 246.360 kb on + strand, within bgtA at 246.360 kb on + strand, within bgtA at 246.360 kb on + strand, within bgtA at 246.368 kb on - strand, within bgtA at 246.368 kb on - strand, within bgtA at 246.368 kb on - strand, within bgtA at 246.391 kb on - strand, within bgtA at 246.407 kb on - strand, within bgtA at 246.416 kb on + strand, within bgtA at 246.444 kb on - strand, within bgtA at 246.478 kb on - strand, within bgtA at 246.542 kb on - strand, within bgtA at 246.543 kb on - strand, within bgtA at 246.564 kb on + strand at 246.599 kb on - strand at 246.600 kb on - strand at 246.600 kb on - strand at 246.623 kb on - strand at 246.630 kb on + strand at 246.673 kb on + strand at 246.673 kb on + strand at 246.674 kb on - strand at 246.686 kb on - strand, within Synpcc7942_0250 at 246.686 kb on - strand, within Synpcc7942_0250 at 246.688 kb on + strand, within Synpcc7942_0250 at 246.688 kb on + strand, within Synpcc7942_0250 at 246.688 kb on + strand, within Synpcc7942_0250 at 246.688 kb on + strand, within Synpcc7942_0250 at 246.696 kb on - strand, within Synpcc7942_0250 at 246.696 kb on - strand, within Synpcc7942_0250 at 246.696 kb on - strand, within Synpcc7942_0250 at 246.758 kb on - strand, within Synpcc7942_0250 at 246.781 kb on - strand, within Synpcc7942_0250 at 246.781 kb on - strand, within Synpcc7942_0250 at 246.781 kb on - strand, within Synpcc7942_0250 at 246.793 kb on - strand, within Synpcc7942_0250 at 246.794 kb on + strand, within Synpcc7942_0250 at 246.801 kb on - strand, within Synpcc7942_0250 at 246.806 kb on - strand, within Synpcc7942_0250 at 246.806 kb on - strand, within Synpcc7942_0250 at 246.826 kb on - strand, within Synpcc7942_0250 at 246.828 kb on + strand, within Synpcc7942_0250 at 246.828 kb on + strand, within Synpcc7942_0250 at 246.833 kb on + strand, within Synpcc7942_0250 at 246.836 kb on - strand, within Synpcc7942_0250 at 246.841 kb on - strand, within Synpcc7942_0250 at 246.861 kb on - strand at 246.866 kb on - strand, within Synpcc7942_0250 at 246.898 kb on + strand, within Synpcc7942_0250 at 246.898 kb on + strand, within Synpcc7942_0250 at 246.903 kb on + strand, within Synpcc7942_0250 at 246.903 kb on + strand, within Synpcc7942_0250 at 246.905 kb on + strand, within Synpcc7942_0250 at 246.906 kb on - strand, within Synpcc7942_0250 at 246.906 kb on - strand, within Synpcc7942_0250 at 246.913 kb on + strand, within Synpcc7942_0250 at 246.918 kb on + strand, within Synpcc7942_0250 at 246.921 kb on - strand, within Synpcc7942_0250 at 246.926 kb on - strand, within Synpcc7942_0250 at 246.926 kb on - strand, within Synpcc7942_0250 at 247.055 kb on - strand, within Synpcc7942_0250 at 247.055 kb on - strand at 247.096 kb on + strand at 247.112 kb on + strand at 247.117 kb on + strand at 247.125 kb on - strand at 247.125 kb on - strand at 247.137 kb on - strand at 247.156 kb on + strand at 247.156 kb on + strand at 247.164 kb on - strand at 247.210 kb on - strand, within Synpcc7942_0251 at 247.210 kb on - strand, within Synpcc7942_0251 at 247.230 kb on - strand, within Synpcc7942_0251 at 247.238 kb on - strand, within Synpcc7942_0251 at 247.264 kb on - strand, within Synpcc7942_0251 at 247.280 kb on + strand, within Synpcc7942_0251 at 247.289 kb on + strand, within Synpcc7942_0251 at 247.336 kb on - strand, within Synpcc7942_0251 at 247.378 kb on - strand, within Synpcc7942_0251 at 247.380 kb on + strand, within Synpcc7942_0251 at 247.383 kb on - strand, within Synpcc7942_0251 at 247.388 kb on - strand, within Synpcc7942_0251 at 247.417 kb on + strand, within Synpcc7942_0251 at 247.439 kb on - strand, within Synpcc7942_0251 at 247.451 kb on + strand, within Synpcc7942_0251 at 247.451 kb on + strand, within Synpcc7942_0251 at 247.451 kb on + strand, within Synpcc7942_0251 at 247.459 kb on - strand, within Synpcc7942_0251 at 247.492 kb on + strand, within Synpcc7942_0251 at 247.496 kb on + strand, within Synpcc7942_0251 at 247.506 kb on - strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.511 kb on + strand, within Synpcc7942_0251 at 247.512 kb on - strand, within Synpcc7942_0251 at 247.519 kb on - strand, within Synpcc7942_0251 at 247.519 kb on - strand at 247.519 kb on - strand, within Synpcc7942_0251 at 247.519 kb on - strand, within Synpcc7942_0251 at 247.521 kb on + strand, within Synpcc7942_0251 at 247.521 kb on + strand, within Synpcc7942_0251 at 247.529 kb on - strand, within Synpcc7942_0251 at 247.539 kb on + strand, within Synpcc7942_0251 at 247.541 kb on - strand, within Synpcc7942_0251 at 247.568 kb on + strand, within Synpcc7942_0251 at 247.602 kb on + strand, within Synpcc7942_0251 at 247.639 kb on + strand, within Synpcc7942_0251 at 247.654 kb on - strand, within Synpcc7942_0251 at 247.655 kb on - strand, within Synpcc7942_0251 at 247.655 kb on - strand, within Synpcc7942_0251 at 247.664 kb on - strand, within Synpcc7942_0251 at 247.671 kb on + strand, within Synpcc7942_0251 at 247.671 kb on + strand, within Synpcc7942_0251 at 247.671 kb on + strand, within Synpcc7942_0251 at 247.679 kb on - strand, within Synpcc7942_0251 at 247.691 kb on + strand, within Synpcc7942_0251 at 247.703 kb on - strand, within Synpcc7942_0251 at 247.715 kb on + strand, within Synpcc7942_0251 at 247.730 kb on + strand, within Synpcc7942_0251 at 247.738 kb on + strand, within Synpcc7942_0251 at 247.746 kb on + strand, within Synpcc7942_0251 at 247.746 kb on - strand, within Synpcc7942_0251 at 247.746 kb on - strand, within Synpcc7942_0251 at 247.746 kb on - strand at 247.751 kb on + strand, within Synpcc7942_0251 at 247.789 kb on - strand, within Synpcc7942_0251 at 247.847 kb on + strand at 247.852 kb on + strand at 247.855 kb on - strand at 247.858 kb on + strand at 247.868 kb on + strand at 247.868 kb on + strand at 247.868 kb on + strand at 247.873 kb on + strand at 247.881 kb on - strand at 247.906 kb on + strand at 247.914 kb on - strand at 247.942 kb on + strand, within cp12 at 248.010 kb on - strand, within cp12 at 248.014 kb on - strand, within cp12 at 248.034 kb on + strand, within cp12 at 248.040 kb on - strand, within cp12 at 248.050 kb on - strand at 248.080 kb on + strand, within cp12 at 248.096 kb on - strand, within cp12 at 248.103 kb on + strand, within cp12 at 248.109 kb on - strand, within cp12 at 248.124 kb on - strand at 248.126 kb on - strand at 248.126 kb on - strand at 248.132 kb on - strand at 248.132 kb on - strand at 248.133 kb on - strand at 248.133 kb on - strand at 248.163 kb on - strand at 248.222 kb on - strand, within Synpcc7942_0253 at 248.243 kb on - strand, within Synpcc7942_0253 at 248.243 kb on - strand, within Synpcc7942_0253 at 248.254 kb on - strand, within Synpcc7942_0253 at 248.263 kb on + strand, within Synpcc7942_0253 at 248.286 kb on - strand, within Synpcc7942_0253 at 248.296 kb on - strand, within Synpcc7942_0253 at 248.312 kb on + strand at 248.312 kb on + strand, within Synpcc7942_0253 at 248.362 kb on + strand, within Synpcc7942_0253 at 248.372 kb on + strand, within Synpcc7942_0253 at 248.375 kb on - strand, within Synpcc7942_0253 at 248.375 kb on - strand, within Synpcc7942_0253 at 248.434 kb on - strand, within Synpcc7942_0253 at 248.439 kb on - strand at 248.439 kb on - strand, within Synpcc7942_0253 at 248.439 kb on - strand, within Synpcc7942_0253 at 248.454 kb on + strand, within Synpcc7942_0253 at 248.459 kb on + strand, within Synpcc7942_0253 at 248.466 kb on + strand, within Synpcc7942_0253 at 248.508 kb on + strand, within Synpcc7942_0253 at 248.530 kb on + strand, within Synpcc7942_0253 at 248.543 kb on + strand, within Synpcc7942_0253 at 248.548 kb on + strand, within Synpcc7942_0253 at 248.551 kb on - strand, within Synpcc7942_0253 at 248.556 kb on - strand, within Synpcc7942_0253 at 248.561 kb on - strand, within Synpcc7942_0253 at 248.590 kb on - strand at 248.633 kb on - strand at 248.711 kb on + strand at 248.711 kb on + strand at 248.719 kb on - strand at 248.725 kb on - strand at 248.739 kb on - strand at 248.849 kb on + strand at 248.861 kb on - strand at 248.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 246,157 + bgtA Synpcc7942_0249 0.39 -1.0 246,176 - bgtA Synpcc7942_0249 0.41 -1.4 246,176 - bgtA Synpcc7942_0249 0.41 -1.9 246,193 - bgtA Synpcc7942_0249 0.44 -1.0 246,201 - bgtA Synpcc7942_0249 0.45 +1.0 246,204 - bgtA Synpcc7942_0249 0.45 -1.5 246,239 - bgtA Synpcc7942_0249 0.49 -2.7 246,271 + bgtA Synpcc7942_0249 0.53 +0.2 246,287 + bgtA Synpcc7942_0249 0.55 -3.2 246,287 + bgtA Synpcc7942_0249 0.55 -0.8 246,290 + bgtA Synpcc7942_0249 0.56 -2.6 246,290 + bgtA Synpcc7942_0249 0.56 -0.4 246,290 + bgtA Synpcc7942_0249 0.56 -0.2 246,298 - bgtA Synpcc7942_0249 0.57 -3.2 246,321 + bgtA Synpcc7942_0249 0.60 -1.4 246,360 + bgtA Synpcc7942_0249 0.65 -0.8 246,360 + bgtA Synpcc7942_0249 0.65 -1.2 246,360 + bgtA Synpcc7942_0249 0.65 -0.6 246,360 + bgtA Synpcc7942_0249 0.65 -0.4 246,368 - bgtA Synpcc7942_0249 0.66 -1.5 246,368 - bgtA Synpcc7942_0249 0.66 -1.9 246,368 - bgtA Synpcc7942_0249 0.66 +0.3 246,391 - bgtA Synpcc7942_0249 0.69 -0.8 246,407 - bgtA Synpcc7942_0249 0.71 -1.3 246,416 + bgtA Synpcc7942_0249 0.72 -0.8 246,444 - bgtA Synpcc7942_0249 0.75 -1.2 246,478 - bgtA Synpcc7942_0249 0.80 -1.8 246,542 - bgtA Synpcc7942_0249 0.88 -2.2 246,543 - bgtA Synpcc7942_0249 0.88 +0.4 246,564 + -3.4 246,599 - -2.5 246,600 - -1.9 246,600 - -2.4 246,623 - -0.4 246,630 + -1.4 246,673 + +0.5 246,673 + -0.9 246,674 - +0.8 246,686 - Synpcc7942_0250 0.10 -0.8 246,686 - Synpcc7942_0250 0.10 -0.3 246,688 + Synpcc7942_0250 0.10 -0.4 246,688 + Synpcc7942_0250 0.10 -0.1 246,688 + Synpcc7942_0250 0.10 +0.8 246,688 + Synpcc7942_0250 0.10 -0.2 246,696 - Synpcc7942_0250 0.12 -1.1 246,696 - Synpcc7942_0250 0.12 +0.8 246,696 - Synpcc7942_0250 0.12 -0.5 246,758 - Synpcc7942_0250 0.25 -0.0 246,781 - Synpcc7942_0250 0.30 -0.0 246,781 - Synpcc7942_0250 0.30 -1.5 246,781 - Synpcc7942_0250 0.30 +1.8 246,793 - Synpcc7942_0250 0.33 +0.4 246,794 + Synpcc7942_0250 0.33 -0.1 246,801 - Synpcc7942_0250 0.35 +0.3 246,806 - Synpcc7942_0250 0.36 +0.6 246,806 - Synpcc7942_0250 0.36 -0.2 246,826 - Synpcc7942_0250 0.40 -0.4 246,828 + Synpcc7942_0250 0.40 -0.0 246,828 + Synpcc7942_0250 0.40 +0.8 246,833 + Synpcc7942_0250 0.41 -0.2 246,836 - Synpcc7942_0250 0.42 -2.2 246,841 - Synpcc7942_0250 0.43 +0.2 246,861 - +2.1 246,866 - Synpcc7942_0250 0.49 +1.2 246,898 + Synpcc7942_0250 0.55 +0.0 246,898 + Synpcc7942_0250 0.55 -1.0 246,903 + Synpcc7942_0250 0.56 +0.8 246,903 + Synpcc7942_0250 0.56 +0.6 246,905 + Synpcc7942_0250 0.57 -2.3 246,906 - Synpcc7942_0250 0.57 +1.0 246,906 - Synpcc7942_0250 0.57 -1.0 246,913 + Synpcc7942_0250 0.59 +0.2 246,918 + Synpcc7942_0250 0.60 +0.9 246,921 - Synpcc7942_0250 0.60 -0.8 246,926 - Synpcc7942_0250 0.61 -0.0 246,926 - Synpcc7942_0250 0.61 -0.3 247,055 - Synpcc7942_0250 0.89 +0.1 247,055 - +1.4 247,096 + -0.6 247,112 + -0.9 247,117 + +0.8 247,125 - -1.1 247,125 - +0.1 247,137 - +1.0 247,156 + +0.4 247,156 + -1.7 247,164 - +1.6 247,210 - Synpcc7942_0251 0.13 -2.8 247,210 - Synpcc7942_0251 0.13 -0.9 247,230 - Synpcc7942_0251 0.16 -0.1 247,238 - Synpcc7942_0251 0.17 -0.6 247,264 - Synpcc7942_0251 0.20 -0.5 247,280 + Synpcc7942_0251 0.22 -1.3 247,289 + Synpcc7942_0251 0.23 -0.4 247,336 - Synpcc7942_0251 0.29 +0.1 247,378 - Synpcc7942_0251 0.35 -0.3 247,380 + Synpcc7942_0251 0.35 -0.3 247,383 - Synpcc7942_0251 0.35 -0.4 247,388 - Synpcc7942_0251 0.36 -1.3 247,417 + Synpcc7942_0251 0.40 -1.5 247,439 - Synpcc7942_0251 0.43 -1.6 247,451 + Synpcc7942_0251 0.44 -0.5 247,451 + Synpcc7942_0251 0.44 -0.3 247,451 + Synpcc7942_0251 0.44 -0.6 247,459 - Synpcc7942_0251 0.45 -1.0 247,492 + Synpcc7942_0251 0.50 -0.1 247,496 + Synpcc7942_0251 0.50 +0.0 247,506 - Synpcc7942_0251 0.51 -1.3 247,511 + Synpcc7942_0251 0.52 +0.5 247,511 + Synpcc7942_0251 0.52 +0.4 247,511 + Synpcc7942_0251 0.52 -0.2 247,511 + Synpcc7942_0251 0.52 -0.7 247,511 + Synpcc7942_0251 0.52 +0.4 247,511 + Synpcc7942_0251 0.52 -1.1 247,511 + Synpcc7942_0251 0.52 +0.5 247,511 + Synpcc7942_0251 0.52 -0.7 247,511 + Synpcc7942_0251 0.52 -1.2 247,512 - Synpcc7942_0251 0.52 -2.7 247,519 - Synpcc7942_0251 0.53 -0.3 247,519 - -0.4 247,519 - Synpcc7942_0251 0.53 +0.6 247,519 - Synpcc7942_0251 0.53 +0.1 247,521 + Synpcc7942_0251 0.53 -1.2 247,521 + Synpcc7942_0251 0.53 +0.3 247,529 - Synpcc7942_0251 0.54 -2.7 247,539 + Synpcc7942_0251 0.56 -0.1 247,541 - Synpcc7942_0251 0.56 +1.3 247,568 + Synpcc7942_0251 0.59 +1.1 247,602 + Synpcc7942_0251 0.64 -2.4 247,639 + Synpcc7942_0251 0.69 -0.3 247,654 - Synpcc7942_0251 0.71 -0.2 247,655 - Synpcc7942_0251 0.71 +0.4 247,655 - Synpcc7942_0251 0.71 -0.0 247,664 - Synpcc7942_0251 0.72 -1.0 247,671 + Synpcc7942_0251 0.73 -0.8 247,671 + Synpcc7942_0251 0.73 +0.1 247,671 + Synpcc7942_0251 0.73 -1.2 247,679 - Synpcc7942_0251 0.74 -1.2 247,691 + Synpcc7942_0251 0.75 -0.2 247,703 - Synpcc7942_0251 0.77 -2.2 247,715 + Synpcc7942_0251 0.78 +0.2 247,730 + Synpcc7942_0251 0.80 -0.6 247,738 + Synpcc7942_0251 0.81 +0.3 247,746 + Synpcc7942_0251 0.82 -0.8 247,746 - Synpcc7942_0251 0.82 +0.3 247,746 - Synpcc7942_0251 0.82 -0.2 247,746 - -0.2 247,751 + Synpcc7942_0251 0.83 -1.5 247,789 - Synpcc7942_0251 0.88 -0.2 247,847 + -0.6 247,852 + -0.0 247,855 - -0.3 247,858 + -0.4 247,868 + -1.2 247,868 + +0.1 247,868 + -0.2 247,873 + -0.6 247,881 - +0.2 247,906 + -0.3 247,914 - -0.0 247,942 + cp12 Synpcc7942_0252 0.14 +0.4 248,010 - cp12 Synpcc7942_0252 0.44 +0.1 248,014 - cp12 Synpcc7942_0252 0.46 -0.3 248,034 + cp12 Synpcc7942_0252 0.55 -0.2 248,040 - cp12 Synpcc7942_0252 0.57 -0.8 248,050 - -0.2 248,080 + cp12 Synpcc7942_0252 0.75 +0.4 248,096 - cp12 Synpcc7942_0252 0.82 -1.2 248,103 + cp12 Synpcc7942_0252 0.85 -1.4 248,109 - cp12 Synpcc7942_0252 0.88 -0.6 248,124 - -1.9 248,126 - +0.2 248,126 - -0.4 248,132 - -0.3 248,132 - +1.4 248,133 - -0.2 248,133 - -0.3 248,163 - -1.7 248,222 - Synpcc7942_0253 0.11 +0.2 248,243 - Synpcc7942_0253 0.16 -0.3 248,243 - Synpcc7942_0253 0.16 +0.5 248,254 - Synpcc7942_0253 0.18 -1.0 248,263 + Synpcc7942_0253 0.20 +0.1 248,286 - Synpcc7942_0253 0.25 -2.1 248,296 - Synpcc7942_0253 0.27 -0.2 248,312 + +0.1 248,312 + Synpcc7942_0253 0.31 -0.5 248,362 + Synpcc7942_0253 0.42 +0.3 248,372 + Synpcc7942_0253 0.44 -0.8 248,375 - Synpcc7942_0253 0.44 -1.7 248,375 - Synpcc7942_0253 0.44 -0.5 248,434 - Synpcc7942_0253 0.57 -1.5 248,439 - -0.2 248,439 - Synpcc7942_0253 0.58 +0.1 248,439 - Synpcc7942_0253 0.58 -0.1 248,454 + Synpcc7942_0253 0.62 +0.4 248,459 + Synpcc7942_0253 0.63 +0.4 248,466 + Synpcc7942_0253 0.64 -0.2 248,508 + Synpcc7942_0253 0.73 -0.1 248,530 + Synpcc7942_0253 0.78 -0.1 248,543 + Synpcc7942_0253 0.81 -0.0 248,548 + Synpcc7942_0253 0.82 -0.0 248,551 - Synpcc7942_0253 0.83 +0.9 248,556 - Synpcc7942_0253 0.84 -0.2 248,561 - Synpcc7942_0253 0.85 -1.3 248,590 - -0.1 248,633 - -0.4 248,711 + +0.6 248,711 + +1.0 248,719 - -0.0 248,725 - -0.3 248,739 - +1.1 248,849 + -1.6 248,861 - -2.2 248,863 - -3.0
Or see this region's nucleotide sequence