Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0075

Experiment: BG11

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntlytB and Synpcc7942_0074 are separated by 109 nucleotidesSynpcc7942_0074 and pepP are separated by 115 nucleotidespepP and Synpcc7942_0076 are separated by 2 nucleotidesSynpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides Synpcc7942_0073: lytB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 72,000 to 73,196 lytB Synpcc7942_0074: Synpcc7942_0074 - hypothetical protein, at 73,306 to 73,659 _0074 Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088 pepP Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852 _0076 Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617 _0077 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 73.252 kb on + strandat 73.260 kb on - strandat 73.330 kb on + strandat 73.336 kb on + strandat 73.344 kb on - strand, within Synpcc7942_0074at 73.345 kb on - strand, within Synpcc7942_0074at 73.379 kb on - strandat 73.389 kb on - strand, within Synpcc7942_0074at 73.389 kb on - strand, within Synpcc7942_0074at 73.408 kb on + strand, within Synpcc7942_0074at 73.419 kb on + strand, within Synpcc7942_0074at 73.422 kb on - strand, within Synpcc7942_0074at 73.426 kb on + strand, within Synpcc7942_0074at 73.433 kb on + strand, within Synpcc7942_0074at 73.433 kb on + strand, within Synpcc7942_0074at 73.441 kb on - strand, within Synpcc7942_0074at 73.441 kb on - strand, within Synpcc7942_0074at 73.474 kb on - strand, within Synpcc7942_0074at 73.484 kb on + strand, within Synpcc7942_0074at 73.489 kb on + strand, within Synpcc7942_0074at 73.496 kb on - strand, within Synpcc7942_0074at 73.497 kb on - strand, within Synpcc7942_0074at 73.503 kb on + strandat 73.525 kb on - strand, within Synpcc7942_0074at 73.525 kb on - strand, within Synpcc7942_0074at 73.526 kb on + strand, within Synpcc7942_0074at 73.543 kb on + strand, within Synpcc7942_0074at 73.543 kb on + strand, within Synpcc7942_0074at 73.544 kb on - strand, within Synpcc7942_0074at 73.545 kb on + strand, within Synpcc7942_0074at 73.551 kb on - strandat 73.553 kb on - strand, within Synpcc7942_0074at 73.568 kb on - strand, within Synpcc7942_0074at 73.580 kb on + strand, within Synpcc7942_0074at 73.592 kb on + strand, within Synpcc7942_0074at 73.597 kb on + strand, within Synpcc7942_0074at 73.600 kb on - strand, within Synpcc7942_0074at 73.600 kb on - strand, within Synpcc7942_0074at 73.605 kb on - strand, within Synpcc7942_0074at 73.619 kb on + strand, within Synpcc7942_0074at 73.619 kb on + strand, within Synpcc7942_0074at 73.619 kb on + strand, within Synpcc7942_0074at 73.619 kb on + strand, within Synpcc7942_0074at 73.619 kb on + strand, within Synpcc7942_0074at 73.619 kb on + strand, within Synpcc7942_0074at 73.622 kb on - strand, within Synpcc7942_0074at 73.627 kb on - strandat 73.627 kb on - strandat 73.649 kb on + strandat 73.657 kb on - strandat 73.678 kb on + strandat 73.737 kb on - strandat 73.767 kb on + strandat 73.772 kb on + strandat 73.775 kb on - strandat 73.778 kb on + strandat 73.780 kb on - strandat 73.883 kb on + strandat 73.901 kb on - strandat 74.055 kb on - strand, within pepPat 74.196 kb on + strand, within pepPat 74.240 kb on - strand, within pepPat 74.284 kb on - strand, within pepPat 74.345 kb on + strand, within pepPat 74.516 kb on - strand, within pepPat 74.637 kb on + strand, within pepPat 74.724 kb on + strand, within pepPat 74.755 kb on + strand, within pepPat 74.756 kb on + strand, within pepPat 74.833 kb on + strand, within pepPat 74.859 kb on + strand, within pepPat 74.924 kb on + strand, within pepPat 74.926 kb on + strand, within pepPat 74.934 kb on - strand, within pepPat 74.958 kb on - strandat 75.082 kb on - strandat 75.131 kb on + strandat 75.131 kb on + strandat 75.141 kb on + strandat 75.149 kb on - strandat 75.236 kb on + strand, within Synpcc7942_0076at 75.236 kb on + strand, within Synpcc7942_0076at 75.244 kb on - strand, within Synpcc7942_0076at 75.244 kb on - strand, within Synpcc7942_0076at 75.244 kb on - strand, within Synpcc7942_0076at 75.320 kb on + strand, within Synpcc7942_0076at 75.328 kb on - strand, within Synpcc7942_0076at 75.357 kb on + strand, within Synpcc7942_0076at 75.357 kb on + strand, within Synpcc7942_0076at 75.397 kb on - strand, within Synpcc7942_0076at 75.397 kb on - strand, within Synpcc7942_0076at 75.397 kb on - strand, within Synpcc7942_0076at 75.436 kb on + strand, within Synpcc7942_0076at 75.436 kb on + strand, within Synpcc7942_0076at 75.444 kb on - strand, within Synpcc7942_0076at 75.446 kb on + strandat 75.446 kb on + strand, within Synpcc7942_0076at 75.454 kb on - strand, within Synpcc7942_0076at 75.454 kb on - strand, within Synpcc7942_0076at 75.479 kb on - strand, within Synpcc7942_0076at 75.526 kb on + strand, within Synpcc7942_0076at 75.526 kb on + strand, within Synpcc7942_0076at 75.526 kb on + strand, within Synpcc7942_0076at 75.534 kb on - strandat 75.534 kb on - strand, within Synpcc7942_0076at 75.557 kb on - strand, within Synpcc7942_0076at 75.693 kb on - strand, within Synpcc7942_0076at 75.764 kb on - strand, within Synpcc7942_0076at 75.791 kb on + strandat 75.799 kb on - strandat 75.799 kb on - strandat 75.996 kb on + strandat 75.999 kb on - strand, within Synpcc7942_0077at 76.037 kb on - strand, within Synpcc7942_0077at 76.037 kb on - strand, within Synpcc7942_0077at 76.085 kb on + strand, within Synpcc7942_0077

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11
remove
73,252 + -0.5
73,260 - +0.0
73,330 + -0.4
73,336 + +0.0
73,344 - Synpcc7942_0074 0.11 +0.6
73,345 - Synpcc7942_0074 0.11 +1.0
73,379 - +0.4
73,389 - Synpcc7942_0074 0.23 +0.8
73,389 - Synpcc7942_0074 0.23 -0.0
73,408 + Synpcc7942_0074 0.29 +0.6
73,419 + Synpcc7942_0074 0.32 -0.2
73,422 - Synpcc7942_0074 0.33 -0.3
73,426 + Synpcc7942_0074 0.34 +0.9
73,433 + Synpcc7942_0074 0.36 +0.4
73,433 + Synpcc7942_0074 0.36 -1.6
73,441 - Synpcc7942_0074 0.38 -0.0
73,441 - Synpcc7942_0074 0.38 +0.3
73,474 - Synpcc7942_0074 0.47 -0.0
73,484 + Synpcc7942_0074 0.50 -1.6
73,489 + Synpcc7942_0074 0.52 +0.6
73,496 - Synpcc7942_0074 0.54 -0.7
73,497 - Synpcc7942_0074 0.54 -0.0
73,503 + +0.1
73,525 - Synpcc7942_0074 0.62 +0.2
73,525 - Synpcc7942_0074 0.62 -0.8
73,526 + Synpcc7942_0074 0.62 +0.4
73,543 + Synpcc7942_0074 0.67 -1.1
73,543 + Synpcc7942_0074 0.67 +0.0
73,544 - Synpcc7942_0074 0.67 -0.2
73,545 + Synpcc7942_0074 0.68 -0.5
73,551 - +0.4
73,553 - Synpcc7942_0074 0.70 -0.9
73,568 - Synpcc7942_0074 0.74 +0.5
73,580 + Synpcc7942_0074 0.77 +1.2
73,592 + Synpcc7942_0074 0.81 +0.6
73,597 + Synpcc7942_0074 0.82 +1.0
73,600 - Synpcc7942_0074 0.83 -1.7
73,600 - Synpcc7942_0074 0.83 -0.1
73,605 - Synpcc7942_0074 0.84 -2.2
73,619 + Synpcc7942_0074 0.88 -1.4
73,619 + Synpcc7942_0074 0.88 +1.0
73,619 + Synpcc7942_0074 0.88 -0.0
73,619 + Synpcc7942_0074 0.88 -0.3
73,619 + Synpcc7942_0074 0.88 +0.1
73,619 + Synpcc7942_0074 0.88 +0.5
73,622 - Synpcc7942_0074 0.89 +0.3
73,627 - +0.2
73,627 - +0.7
73,649 + -0.4
73,657 - -0.3
73,678 + -0.7
73,737 - +0.2
73,767 + +0.4
73,772 + -1.1
73,775 - +0.7
73,778 + -2.2
73,780 - +0.5
73,883 + -2.6
73,901 - -2.4
74,055 - pepP Synpcc7942_0075 0.21 -1.9
74,196 + pepP Synpcc7942_0075 0.32 -1.6
74,240 - pepP Synpcc7942_0075 0.35 -4.0
74,284 - pepP Synpcc7942_0075 0.39 -2.3
74,345 + pepP Synpcc7942_0075 0.43 -2.4
74,516 - pepP Synpcc7942_0075 0.56 +1.4
74,637 + pepP Synpcc7942_0075 0.66 -3.2
74,724 + pepP Synpcc7942_0075 0.72 -2.7
74,755 + pepP Synpcc7942_0075 0.75 -0.9
74,756 + pepP Synpcc7942_0075 0.75 -2.6
74,833 + pepP Synpcc7942_0075 0.81 -2.1
74,859 + pepP Synpcc7942_0075 0.82 -1.3
74,924 + pepP Synpcc7942_0075 0.87 -1.5
74,926 + pepP Synpcc7942_0075 0.88 -1.9
74,934 - pepP Synpcc7942_0075 0.88 -1.9
74,958 - -1.9
75,082 - -1.3
75,131 + -0.4
75,131 + -0.3
75,141 + -0.0
75,149 - -0.1
75,236 + Synpcc7942_0076 0.19 -1.1
75,236 + Synpcc7942_0076 0.19 -1.2
75,244 - Synpcc7942_0076 0.20 +0.2
75,244 - Synpcc7942_0076 0.20 +0.8
75,244 - Synpcc7942_0076 0.20 +0.0
75,320 + Synpcc7942_0076 0.30 +0.5
75,328 - Synpcc7942_0076 0.31 -0.3
75,357 + Synpcc7942_0076 0.35 -0.5
75,357 + Synpcc7942_0076 0.35 +0.5
75,397 - Synpcc7942_0076 0.40 +1.0
75,397 - Synpcc7942_0076 0.40 -0.4
75,397 - Synpcc7942_0076 0.40 +0.2
75,436 + Synpcc7942_0076 0.45 +0.4
75,436 + Synpcc7942_0076 0.45 -1.4
75,444 - Synpcc7942_0076 0.46 -0.4
75,446 + +0.4
75,446 + Synpcc7942_0076 0.47 +0.2
75,454 - Synpcc7942_0076 0.48 -2.5
75,454 - Synpcc7942_0076 0.48 -0.2
75,479 - Synpcc7942_0076 0.51 +1.2
75,526 + Synpcc7942_0076 0.57 +0.5
75,526 + Synpcc7942_0076 0.57 -0.1
75,526 + Synpcc7942_0076 0.57 +0.6
75,534 - -0.4
75,534 - Synpcc7942_0076 0.58 +0.4
75,557 - Synpcc7942_0076 0.61 -0.5
75,693 - Synpcc7942_0076 0.79 -0.4
75,764 - Synpcc7942_0076 0.88 -0.5
75,791 + +0.1
75,799 - +0.6
75,799 - -0.3
75,996 + -0.5
75,999 - Synpcc7942_0077 0.10 -0.5
76,037 - Synpcc7942_0077 0.16 -0.1
76,037 - Synpcc7942_0077 0.16 +0.9
76,085 + Synpcc7942_0077 0.23 -0.3

Or see this region's nucleotide sequence